TABLE 1.
Strains, plasmids, and oligonucleotides | Relevant characteristicsa | Source or reference |
---|---|---|
Strains | ||
E. coli | ||
JM103 | hsdR4 Δ(lac-pro) F′ traD36 proAB laclqZΔM15 | 5 |
JM109 | hsdR17 Δ(lac-pro) F′ traD36 proAB laclqZΔM15 | 5 |
XL1-Blue | supE44 hsdR17 recA1 endA1 gyrA46 thi relA1 lac F′ [proAB+laclqlacZΔM15 Tn10(Tetr)] | 5 |
M15(pREP4) | thi lac ara+gal mtl F′ recA+uvr+lon+; pREP4 plasmid Kanr | Qiagen |
R. sphaeroides WS8 | Wild type; spontaneous Nalr | 22 |
Plasmids | ||
pQE30 | Expression vector; Apr, N-terminal His6 tag | Qiagen |
pQE60 | Expression vector; Apr, C-terminal His6 tag | Qiagen |
pRSM | fliM cloned into the NcoI/BglII sites of pQE60 | This work |
pRSMΔ13 | fliMΔ13 cloned into the NcoI/BglII sites of pQE60 | This work |
pRSMΔ20 | fliMΔ20 cloned into the NcoI/BglII sites of pQE60 | This work |
pRSY1 | cheY1 cloned into the NcoI/BamHI sites of pQE60 | This work |
pRSY2 | cheY2 cloned into the SacI/PstI sites of pQE30 | This work |
pRSY3 | cheY3 cloned into the BamHI/PstI sites of pQE30 | This work |
pRSY4 | cheY4 cloned into the NcoI/BamHI sites of pQE60 | This work |
pRSY5 | cheY5 cloned into the BamHI/PstI sites of pQE30 | This work |
pRSY6 | cheY6 cloned into the BamHI/PstI sites of pQE30 | This work |
Oligonucleotidesb | ||
cheY1 fw | 5′-CATGCCATGGCGCCGCTGACCGTTCTTGCC-3′ | This work |
cheY1 rev | 5′-CTCACGGACTGCTCGGATGAAGCC-3′ | This work |
cheY2 fw | 5′-CCGAGCTCGTGGTCGATGACATGTCGACCAGC-3′ | This work |
cheY2 rev | 5′-AAAACTGCAGTCATAGAGCGCCTACGACAGC-3′ | This work |
cheY3 fw | 5′-CGCGGATCCAGCAGGACGGTTCTCGCCGTG-3′ | This work |
cheY3 rev | 5′-AAAACTGCAGTCATCCGAGCACCTTCTTGAT-3′ | This work |
cheY4 fw | 5′-CATGCCATGGCGACGAAAACCGTCCTCGCA-3′ | This work |
cheY4 rev | 5′-CGCGGATCCGGCCAAGAAGCTTCTTCATCAC-3′ | This work |
cheY5 fw | 5′-CGCGGATCCAGCAAGACGATCCTCGCGGTGGAT-3′ | This work |
cheY5 rev | 5′-AAAACTGCAGTCAGGCGCCGGCCACCTTCTTGAC-3′ | This work |
cheY6 fw | 5′-GCGGGATCCCCCTACAATGTCATGATC-3′ | This work |
cheY6 rev | 5′-AAAACTGCAGTCAGGCGGCCATCAGCGT-3′ | This work |
Apr, ampicillin resistance; Kanr, kanamycin resistance; Nalr, nalidixic acid resistance.
fw, forward; rev, reverse.