Table 2.

SNPs showing significant association with the cider/dessert or bitter/sweet phenotypes when taking into account structure and kinship between individuals using GEMMA

SNP Name	LG	Position	P-value
RosBREEDSNP_SNP_CT_22024068_Lg5_RosCOS3072_MAF30_MDP0000753788_exon2	5	19 238 624	3.83 × 10−4
RosBREEDSNP_SNP_TC_15251985_Lg8_00354_MAF10_753213_exon1	8	13 053 086	8.98 × 10−5
RosBREEDSNP_SNP_TG_23835076_Lg8_RosCOS3331_MAF40_488673_exon1	8	19 848 379	1.99 × 10−4
RosBREEDSNP_SNP_GA_33077622_Lg9_01200_MAF20_MDP0000613052_exon1	9	29 701 351	2.24 × 10−4
RosBREEDSNP_SNP_GA_1240623_Lg12_RosCOS3293_MAF40_1686868_exon1	12	1 033 191	4.12 × 10−4
RosBREEDSNP_SNP_AG_27056933_Lg15_02084_MAF30_1677692_exon1	15	23 859 694	2.06 × 10−4
RosBREEDSNP_SNP_AG_32748739_Lg1_RosCOS2753_MAF10_520680_exon1	1	26 153 648	1.86 × 10−5
RosBREEDSNP_SNP_AC_33325153_Lg1_01951_MAF10_132337_exon1	1	26 730 062	2.10 × 10−4
GDsnp01850	15	23 124 410	7.20 × 10−4
RosBREEDSNP_SNP_AC_1452699_Lg16_MDP0000303483_MAF50_MDP0000303483_exon2	16	1 452 699	2.78 × 10−4
RosBREEDSNP_SNP_CT_8827345_Lg17_01842_MAF30_MDP0000891106_exon4	17	8 427 545	7.87 × 10−5
RosBREEDSNP_SNP_CT_17294445_Lg17_01964_MAF10_1662340_exon9	17	1 588 1764	7.14 × 10−4

LG, Linkage Group.

SNP associated with the cider/dessert phenotype.

SNP associated with the bitter/sweet phenotype.