Skip to main content
. 2009 May 1;13(9b):3570–3590. doi: 10.1111/j.1582-4934.2009.00762.x

Table 1.

Sequence of primers used for conventional RT-PCR

Gene Primer sequence Product size (bp)
Oct4 Oct4F: 5′-CGRGAAGCTGGAGAAGGAGAAGCTG-3′ 247 (55°C)
Oct4R: 5′-AAGGGCCGCAGCTTACACATGTTC-3′
Rex1 Rex1F: 5′-GCTGACCACCAGCACACTAGGC-3′ 298 (55°C)
Rex1R: 5′-TTTCTGGTGTCTTGTCTTTGCCCG-3′
Col 2A1 Col2F: 5′-TTCAGCTATGGAGATGACAATC-3′ 472
Col2R: 5′-AGAGTCCTAGAGTGACTGAG-3′
Col2AB Col2AB-F: 5′-CTG CTC GTC GCC GCT GTC CTT-3′ 432bp (splice variant A
Col2AB-R: 5′-AAG GGT CCC AGG TTC TCC ATC-3′ 225 bp (splice variant B)
Decorin DecoF:5′-CCTTTGGTGAAGTTGGAACG-3′ 300 (55°C)
DecoR:5′-AAGATGTAATTCCGTAAGGG-3′
Biglycan BiglyF:5′-TGCAGAACAACGACATCTCC-3′ 475
BiglyR: 5′-AGCTTGGAGTAGCGAAGCAG-3′
COMP COMP-F: 5′-CAACTGTCCCCAGAAGAGCAA-3′ 588
COMP-R: 5′-TGGTAGCCAAAGATGAAGCCC-3′
Col 9A1 Col9-F: 5′-ACAGCAGGACTCCCTGGA-3′ 410
Col9-R: 5′-TGATCACCAGGTGCACCAG-3′
Link protein LPF: 5′-CCTATGATGAAGCGGTGC-3′ 618
LPR: 5′-TTGTGCTTGTGGAACCTG-3′
CD44s CD44F: 5′-TCCATCAAAGGCATTGGGCAG-3′ 326 (56°C)
CD44R: 5′-AACCTGCCGCTTTGCAGGTGT-3′
PDGFR· PDGFR-·F: 5′-ATCAATCAGCCCAGATGGAC-3′ 891 (60°C)
PDGFR-·R: 5′-TTCACGGGCAGAAAGGTACT-3′
NFH NFH-F: 5′- TGAACACAGACGCTATGCGCTCAG-3′ 398 (56°C)
NFH-R: 5′- CACCTTTATGTGAGTGGACACAGAG-3′
cK14 K14F: 5′-ATGATTGGCAGCGTGGAG-3′ 390
K14R: 5′-GTCCAGCTGTGAAGTGCTTG-3′
AFP AFPF: 5′-CCATGTACATGAGCACTGTTG-3′ 338 (55°C)
AFPR: 5′-CTCCAATAACTCCTGGTATCC-3′
VEGFR2 VEGFR2F: 5′-AAAACCTTTTGTTGCTTTTTGA-3′ 237 (55°C)
VEGFR2R: 5′-GAAATGGGATTGGTAAGGATGA-3′
Cbfa1 Cbfa1F: 5′-CGGAATGCCTCTGCTGTTAT-3′ 174
Cbfa1R: 5′-TTCCCGAGGTCCATCTACTG-3′
Osteocalcin OC-F: 5′-ATGAGAGCCCTCACACTCCTC-3′ 294
OC-R: 5′-GCCGTAGAAGCGCCGATAGGC-3′
β-actin β-ActinF: 5′-CCAAGGCCAACCGCGAGAAGATGAC-3′ 587
β-ActinR: 5′-AGGGTACATGGTGGTGCCGCCAGAC-3′

All primers except PDGFRα, NFH and β-actin (mouse/human) are human-specific. The PCR conditions were as follows: 95°C/5 min., 95°C/30 sec., 58°C/45 sec. (except where specified otherwise), 72°C/1 min., and 72°C/5 min.