Table 1.
Sequence of primers used for conventional RT-PCR
Gene | Primer sequence | Product size (bp) |
---|---|---|
Oct4 | Oct4F: 5′-CGRGAAGCTGGAGAAGGAGAAGCTG-3′ | 247 (55°C) |
Oct4R: 5′-AAGGGCCGCAGCTTACACATGTTC-3′ | ||
Rex1 | Rex1F: 5′-GCTGACCACCAGCACACTAGGC-3′ | 298 (55°C) |
Rex1R: 5′-TTTCTGGTGTCTTGTCTTTGCCCG-3′ | ||
Col 2A1 | Col2F: 5′-TTCAGCTATGGAGATGACAATC-3′ | 472 |
Col2R: 5′-AGAGTCCTAGAGTGACTGAG-3′ | ||
Col2AB | Col2AB-F: 5′-CTG CTC GTC GCC GCT GTC CTT-3′ | 432bp (splice variant A |
Col2AB-R: 5′-AAG GGT CCC AGG TTC TCC ATC-3′ | 225 bp (splice variant B) | |
Decorin | DecoF:5′-CCTTTGGTGAAGTTGGAACG-3′ | 300 (55°C) |
DecoR:5′-AAGATGTAATTCCGTAAGGG-3′ | ||
Biglycan | BiglyF:5′-TGCAGAACAACGACATCTCC-3′ | 475 |
BiglyR: 5′-AGCTTGGAGTAGCGAAGCAG-3′ | ||
COMP | COMP-F: 5′-CAACTGTCCCCAGAAGAGCAA-3′ | 588 |
COMP-R: 5′-TGGTAGCCAAAGATGAAGCCC-3′ | ||
Col 9A1 | Col9-F: 5′-ACAGCAGGACTCCCTGGA-3′ | 410 |
Col9-R: 5′-TGATCACCAGGTGCACCAG-3′ | ||
Link protein | LPF: 5′-CCTATGATGAAGCGGTGC-3′ | 618 |
LPR: 5′-TTGTGCTTGTGGAACCTG-3′ | ||
CD44s | CD44F: 5′-TCCATCAAAGGCATTGGGCAG-3′ | 326 (56°C) |
CD44R: 5′-AACCTGCCGCTTTGCAGGTGT-3′ | ||
PDGFR· | PDGFR-·F: 5′-ATCAATCAGCCCAGATGGAC-3′ | 891 (60°C) |
PDGFR-·R: 5′-TTCACGGGCAGAAAGGTACT-3′ | ||
NFH | NFH-F: 5′- TGAACACAGACGCTATGCGCTCAG-3′ | 398 (56°C) |
NFH-R: 5′- CACCTTTATGTGAGTGGACACAGAG-3′ | ||
cK14 | K14F: 5′-ATGATTGGCAGCGTGGAG-3′ | 390 |
K14R: 5′-GTCCAGCTGTGAAGTGCTTG-3′ | ||
AFP | AFPF: 5′-CCATGTACATGAGCACTGTTG-3′ | 338 (55°C) |
AFPR: 5′-CTCCAATAACTCCTGGTATCC-3′ | ||
VEGFR2 | VEGFR2F: 5′-AAAACCTTTTGTTGCTTTTTGA-3′ | 237 (55°C) |
VEGFR2R: 5′-GAAATGGGATTGGTAAGGATGA-3′ | ||
Cbfa1 | Cbfa1F: 5′-CGGAATGCCTCTGCTGTTAT-3′ | 174 |
Cbfa1R: 5′-TTCCCGAGGTCCATCTACTG-3′ | ||
Osteocalcin | OC-F: 5′-ATGAGAGCCCTCACACTCCTC-3′ | 294 |
OC-R: 5′-GCCGTAGAAGCGCCGATAGGC-3′ | ||
β-actin | β-ActinF: 5′-CCAAGGCCAACCGCGAGAAGATGAC-3′ | 587 |
β-ActinR: 5′-AGGGTACATGGTGGTGCCGCCAGAC-3′ |
All primers except PDGFRα, NFH and β-actin (mouse/human) are human-specific. The PCR conditions were as follows: 95°C/5 min., 95°C/30 sec., 58°C/45 sec. (except where specified otherwise), 72°C/1 min., and 72°C/5 min.