Table 1.
Putative genes of φPsa17 and their homologues in T7 and conserved domains.
| Locus Tag | T7 Homologue | Description | Start | End | Length (bp) | Domains or PHA# |
|---|---|---|---|---|---|---|
| VO98_005 | hypothetical | 993 | 1262 | 270 | ||
| VO98_010 | hypothetical | 1259 | 1513 | 255 | ||
| VO98_015 | hypothetical | 1513 | 1710 | 198 | ||
| VO98_020 | hypothetical | 1715 | 1990 | 276 | ||
| VO98_025 | hypothetical | 2078 | 2557 | 480 | ||
| VO98_030 | hypothetical | 2588 | 3124 | 537 | ||
| VO98_035 | hypothetical | 3121 | 3825 | 705 | Pfam13640 | |
| VO98_040 | hypothetical | 3825 | 4028 | 204 | ||
| VO98_045 | hypothetical | 4030 | 4470 | 441 | ||
| VO98_050 | gp1 | DNA-directed RNA polymerase (EC 2.7.7.6) | 4598 | 7255 | 2658 | PHA00452 |
| VO98_055 | gp1.1 | hypothetical | 7269 | 7406 | 138 | |
| VO98_060 | hypothetical | 7403 | 7675 | 273 | ||
| VO98_065 | hypothetical | 7675 | 8061 | 387 | ||
| VO98_070 | gp1.3 | ATP-dependent DNA ligase | 8073 | 9137 | 1065 | PHA00454 |
| VO98_075 | gp1.6 | hypothetical | 9331 | 9588 | 258 | PHA00455 |
| VO98_080 | hypothetical | 9585 | 10,232 | 648 | ABC_ATPase superfamily | |
| VO98_085 | gp2 | host RNA polymerase inhibitor | 10,229 | 10,396 | 168 | PHA00457 |
| VO98_090 | hypothetical | 10,393 | 10,758 | 366 | ||
| VO98_095 | gp2.5 | T7-like ssDNA-binding | 10,812 | 11,513 | 702 | PHA00458 |
| VO98_100 | gp3 | T7-like endonuclease (EC 3.1.21.2) | 11,513 | 11,956 | 444 | Phage_endo_I superfamily |
| VO98_105 | gp3.5 | lysozyme, N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) | 11,959 | 12,399 | 441 | PGRP superfamily |
| VO98_110 | hypothetical | 12,469 | 13,008 | 540 | PolyA_pol superfamily | |
| VO98_115 | gp4 | T7-like DNA primase/helicase | 12,995 | 14,686 | 1692 | |
| VO98_120 | hypothetical | 14,705 | 14,902 | 198 | ||
| VO98_125 | hypothetical | 14,971 | 15,480 | 510 | ||
| VO98_130 | gp5 | T7-like DNA Polymerase (EC 2.7.7.7) | 15,491 | 17,638 | 2148 | DNA_pol_A superfamily |
| VO98_135 | hypothetical | 17,651 | 18,031 | 381 | ||
| VO98_140 | gp5.7 | hypothetical | 18,024 | 18,233 | 210 | PHA00422 |
| VO98_145 | gp6 | exonuclease | 18,230 | 19,174 | 945 | PHA00439 |
| VO98_150 | gp6.5 | hypothetical | 19,243 | 19,485 | 243 | DUF2717 |
| VO98_155 | gp6.7 | T7 virion protein | 19,488 | 19,760 | 273 | PHA00441 |
| VO98_160 | gp7 | hypothetical | 19,757 | 20,200 | 444 | PHA01807 |
| VO98_165 | gp7.3 | tail assembly | 20,172 | 20,474 | 303 | PHA00437 |
| VO98_170 | gp8 | collar/T7-like head-to-tail connector | 20,489 | 22,120 | 1632 | PHA00670 |
| VO98_175 | gp9 | capsid and scaffold | 22,189 | 23,064 | 876 | PHA00435 |
| VO98_180 | gp10 | major capsid protein | 23,164 | 24,207 | 1044 | PHA00201 (PHA02004 superfamily) |
| VO98_185 | gp11 | T7-like tail tubular protein A | 24,271 | 24,858 | 588 | PHA00428 |
| VO98_190 | gp12 | T7-like tail tubular protein B | 24,868 | 27,294 | 2427 | |
| VO98_195 | gp13 | protein inside capsid A | 27,353 | 27,787 | 435 | PHA00432 |
| VO98_200 | gp14 | protein inside capsid B | 27,798 | 28,385 | 588 | PHA00101 |
| VO98_205 | gp15 | protein inside capsid C | 28,378 | 30,594 | 2217 | PHA00431 |
| VO98_210 | gp16 | protein inside capsid D | 30,607 | 34,785 | 4179 | PHA00638 |
| VO98_215 | gp17 | tail fibre | 34,848 | 36,677 | 1830 | PHA00430 |
| VO98_220 | hypothetical | 36,717 | 37,073 | 357 | ||
| VO98_225 | gp17.5 | holin, class II | 37,073 | 37,288 | 216 | PHA00426 |
| VO98_230 | gp18 | T7-like DNA packaging protein A, small terminase subunit | 37,285 | 37,542 | 258 | PHA00425 |
| VO98_235 | gp18.5 | endopeptidase (EC 3.4.-.-), lambda Rz-like | 37,542 | 37,991 | 450 | PHA00276 |
| VO98_240 | gp19 | DNA packaging, large terminase subunit | 37,991 | 39,739 | 1749 | Pfam03237 |
| VO98_245 | gp19.5 | hypothetical | 39,919 | 40,092 | 174 |