Table 3.
MIGS ID | Property | Term | ||||
---|---|---|---|---|---|---|
strain ACC19a | strain CM2 | strain CM5 | strain OBRC8 | strain AS15 | ||
MIGS-31 | Finishing quality | High-Quality Draft Genome Sequence | ||||
MIGS-28 | Libraries used | Two 454 pyrosequencing libraries, one standard 0.6 kb fragment library and one 2.5 kb jump library | Two Illumina libraries, one standard 180 bp fragment library and one 3-5 kb jump library | Two 454 pyrosequencing libraries, one standard 0.6 kb fragment library and one 2.5 kb jump library | Standard Illumina paired-end library | Standard Illumina paired-end library |
MIGS-29 | Sequencing platforms | 454 FLX Titanium | Illumina HiSeq 2000 | 454 FLX Titanium | Illumina HiSeq 2000 | Illumina HiSeq 2000 |
MIGS-31.2 | Fold coverage | 40× | 282× | 39× | 32× | 31× |
MIGS-30 | Assemblers | Newbler v.2.3 | ALLPATHS v. R39099 | Newbler v.2.3 | Celera Assembler v.6.1 | Celera Assembler v.6.1 |
MIGS-32 | Gene calling method | PRODIGAL | PRODIGAL | PRODIGAL | GLIMMER | GLIMMER |
Locus Tag | HMPREF9629 | HMPREF9630 | HMPREF9628 | HMPREF1143 | HMPREF1142 | |
GenBank ID | AFZE00000000 | AFZF00000000 | AFZG00000000 | ALNK00000000 | ALJM00000000 | |
GenBank Date of Release | Dec 19, 2011 | Dec 14, 2011 | Dec 19, 2011 | Aug 27, 2012 | Aug 13, 2012 | |
GOLD ID | Gi06852 | Gi06853 | Gi06851 | Gi09663 | Gi09662 | |
BIOPROJECT | 49887 | 49889 | 49891 | 78565 | 78563 | |
MIGS 13 | Source Material Identifier | HM-483; DSM 28705; ATCC BAA-2665 | HM-484; DSM 28703; ATCC BAA-2664 | HM-485; DSM 28704 | HM-765; DSM 28706 | HM-766; DSM 28702; ATCC BAA-2661 |
Project relevance | Human Microbiome Project |