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. Author manuscript; available in PMC: 2015 Jul 28.
Published in final edited form as: Methods Enzymol. 2013;531:371–444. doi: 10.1016/B978-0-12-407863-5.00019-8

Figure 9.

Figure 9

Bootstrapped UPGMA clustering on the example data set. The tree is shown with the internal nodes colored by bootstrap support (red: 75-100%, yellow: 50-75%, green: 25-50% and blue: < 25%). Although this visualization is popular in the literature, we generally recommend alternatives such as PCoA.