Table 5.
Matching metabolic phenotypes of functionally linked A. thaliana metabolism mutants affected outside the photorespiration pathway.
| Query | Top hit | PM score | Functional link |
|---|---|---|---|
| A. thaliana alx8 SAL1/FRY1/RON1 nucleotidase/phosphatase loss-of-function mutant (Wilson et al., 2009) | A. thaliana fry1-1 SAL1/FRY1/RON1 nucleotidase/phosphatase loss-of-function mutant (Wilson et al., 2009) | 7.35 | Independent functionally equivalent mutation, different genetic background |
| A. thaliana aox1a-1 mitochondrial alternative oxidase 1a T-DNA insertion gene knockout mutant under combined drought and moderate high light stress (Giraud et al., 2008) | A. thaliana aox1a-2 mitochondrial alternative oxidase 1a T-DNA insertion gene knockout mutant under combined drought and moderate high light (Giraud et al., 2008) | 10.22 | Independent functionally equivalent gene knockout |
| A. thaliana 4cl1-1 4-coumarate CoA ligase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | A. thaliana 4cl1-2 4-coumarate CoA ligase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | 4.17 | Independent functionally equivalent gene knockout |
| A. thaliana 4cl2-1 4-coumarate CoA ligase 2 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | A. thaliana 4cl2-3 4-coumarate CoA ligase 2 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | 0.95 | Independent functionally equivalent gene knockout |
| A. thaliana c4h-2 cinnamate 4-hydroxylase T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | A. thaliana c4h-3 cinnamate 4-hydroxylase T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | 1.42 | Independent functionally equivalent gene knockout |
| A. thaliana ccaomt1-3 caffeoyl-CoA O-methyltransferase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | A. thaliana ccaomt1-5 caffeoyl-CoA O-methyltransferase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | 5.08 | Independent functionally equivalent gene knockout |
| A. thaliana pal1-2 phenylalanine ammonia lyase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | A. thaliana pal1-3 phenylalanine ammonia lyase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | 0.74 | Independent functionally equivalent gene knockout |
| A. thaliana comt-1 caffeic acid O-methyltransferase T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | A. thaliana f5h1-2 ferulate 5-hydroxylase 1 T-DNA insertion gene knockout mutant (Vanholme et al., 2012) | 1.65 | Functionally linked gene knockout. The metabolic product of COMT is the substrate of F5H1. |