Table 3.

Sequencing and read mapping of the differentially expressed genes (DEGs)

Summary	0 h	6 h	24 h	72 h	Average
Raw reads	7,164,446	7,325,695	7,563,619	7,212,252	7,316,503
Clean reads	7,113,843	7,271,861	7,515,414	7,163,347	7,266,116
Total base pairs	348,578,307	356,321,189	368,255,286	351,004,003	356,039,696
Clean Reads (%)	99.29	99.27	99.36	99.32	99.31
Mapped reads	6,621,141	6,727,919	6,879,216	6,467,083	6,467,087
Mapped reads* (%)	93.07	92.52	91.53	90.28	91.85
Perfect match	5,583,419	5,707,629	5,813,295	5,505,742	5,652,521
Perfect match* (%)	78.49	78.49	77.35	76.83	77.79
<=2 Mismatch	1,037,722	1,020,290	1,065,921	961,341	1,021,319
<=2 Mismatch* (%)	14.59	14.03	14.18	13.42	14.06
Unique match	3,117,820	3,309,503	3,456,940	3,290,477	3,293,685
Unique match* (%)	43.83	45.51	46.00	45.93	45.33
Multi-Position match	3,503,321	3,418,416	3,422,276	3,176,606	3,380,155
Multi-Position match	49.25	47.01	45.54	44.35	46.54
Unmapped reads	492,702	543,942	636,198	696,264	592,277
Unmapped reads* (%)	6.93	7.48	8.47	9.72	8.15