Table 1.
Summary of microarray and metabolomics data sets
| Strain | Medium | Condition | Microarray timepoints analyzed | Metabolite timepoints analyzed |
|---|---|---|---|---|
| ALK2 | MTC | arabinose | 1 | |
| ALK2 | MTC | cellobiose | 2 | 5 |
| ALK2 | MTC | cellobiose: nitrogen-limited | 4 | 4 |
| ALK2 | MTC | cellobiose fed-batch: N-limited | 4 | 5 |
| ALK2 | MTC | enzymatic hydrolysate | 1 | |
| ALK2 | MTC | glucose-arabinose-mannose | 4 | |
| ALK2 | MTC | glucose-xylose | 7 | |
| ALK2 | MTC | glucose-xylose-cellobiose | 1 | |
| ALK2 | MTC | glucose-xylose-ethanol | 1 | |
| ALK2 | MTC | glucose-xylose-acetate shock | 3 | |
| ALK2 | MTC | glucose-xylose-washate shock | 3 | |
| ALK2 | MTC | pretreated hardwood SSF | 3 | |
| ALK2 | MTC | xylose fed-batch | 4 | 5 |
| M0355 | MTC | glucose-xylose | 1 | |
| M0355 | MTC | glucose-xylose-ethanol | 1 | |
| M0355 | MTC | pretreated hardwood SSF | 1 | |
| M0521 | MTC | pretreated hardwood SSF | 2 | |
| M0700 | MTC | glucose-xylose | 2 | |
| M0700 | MTC | glucose-xylose-ethanol | 2 | |
| M0700 | TSD | glucose-xylose HMF + furfural shock | 5 | 5 |
| M1151 | TSC3 | cellobiose-maltodextrin | 4 | 4 |
| M1151 | TSC4 | xylose-detoxified washate shock | 7 | 3 |
| M1291/1442 | TSC4 | sigmacell SSF | 2 | 6 |
| M1732 | TSC7 | xylose-diamide shock | 6 | 5 |