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. 2015 Jul 29;10(7):e0134031. doi: 10.1371/journal.pone.0134031

Fig 1. Genomic SSR discovery pipeline and primer design.

Fig 1

The workflow starts with an independent assembly of each genotype and enrichment for sequence contigs with a length greater than the N50 value. Next, SSRFinder is used to find SSRs and design primers. Possible polymorphisms are detected and screened against the nr database (GenBank) and a priority given to non-repetitive or organellar sequences.