Table 5. Significantly differentially expressed genes for lean versus obese female pigs as analyzed by DESeq2.
| miRNA | baseMean | log2FC | FC | p-value | padj |
|---|---|---|---|---|---|
| ssc-mir-10b-5p | 588019 | -1.14 | -2.21 | 4.08E-30 | 1.99E-27 |
| ssc-mir-125a-5p | 11407 | -0.85 | -1.80 | 7.51E-28 | 1.83E-25 |
| ssc-mir-10a-5p | 72498 | -1.42 | -2.68 | 8.43E-15 | 1.37E-12 |
| ssc-mir-124a-3p | 32 | 3.05 | 8.30 | 1.19E-11 | 1.16E-09 |
| ssc-mir-340-5p | 194 | 0.90 | 1.86 | 6.52E-09 | 4.52E-07 |
| ssc-mir-342-3p | 118 | -1.14 | -2.20 | 7.41E-09 | 4.52E-07 |
| ssc-mir-125b-5p | 6582 | -0.81 | -1.76 | 1.06E-07 | 5.16E-06 |
| ssc-mir-574-3p | 584 | -0.53 | -1.44 | 3.08E-07 | 1.16E-05 |
| ssc-mir-148a-3p | 24953 | -0.64 | -1.56 | 3.75E-07 | 1.31E-05 |
| ssc-mir-151-5p | 8007 | -0.57 | -1.48 | 1.56E-06 | 5.09E-05 |
| ssc-mir-30a-5p | 18751 | -0.49 | -1.40 | 2.29E-06 | 6.99E-05 |
| ssc-mir-191-5p | 64358 | -0.98 | -1.97 | 2.82E-06 | 8.11E-05 |
| ssc-mir-100-5p | 10114 | -1.45 | -2.74 | 6.05E-06 | 1.64E-04 |
| ssc-mir-128-3p | 348 | 0.75 | 1.68 | 8.96E-06 | 2.06E-04 |
| ssc-mir-150-5p | 403 | -0.74 | -1.67 | 1.12E-05 | 2.27E-04 |
| ssc-mir-22-3p | 60767 | 0.34 | 1.27 | 5.11E-05 | 9.97E-04 |
| ssc-mir-2320-5p | 203 | -0.90 | -1.86 | 5.93E-05 | 1.11E-03 |
| ssc-mir-99a-5p | 5018 | -1.03 | -2.04 | 6.13E-05 | 1.11E-03 |
| ssc-mir-365-3p | 604 | -0.68 | -1.60 | 8.33E-05 | 1.40E-03 |
| ssc-mir-127-3p | 3944 | -1.16 | -2.24 | 1.51E-04 | 2.39E-03 |
| ssc-mir-151-3p | 8671 | -0.59 | -1.50 | 1.57E-04 | 2.39E-03 |
| ssc-mir-26a-5p | 65975 | -0.30 | -1.23 | 1.66E-04 | 2.46E-03 |
| ssc-mir-769-5p | 308 | 0.54 | 1.46 | 1.32E-03 | 1.85E-02 |
| ssc-mir-182-5p | 382 | -1.43 | -2.70 | 1.43E-03 | 1.93E-02 |
| ssc-mir-23a-3p | 2939 | -0.39 | -1.31 | 1.92E-03 | 2.29E-02 |
| ssc-mir-30c-5p | 2208 | -0.38 | -1.31 | 1.88E-03 | 2.29E-02 |
| ssc-mir-103-3p | 7213 | 0.67 | 1.60 | 3.24E-03 | 2.58E-02 |
| ssc-mir-214-3p | 652 | -0.36 | -1.28 | 3.11E-03 | 2.58E-02 |
| ssc-mir-218-5p | 141 | 0.82 | 1.77 | 3.38E-03 | 2.58E-02 |
| ssc-mir-361-5p | 300 | -0.52 | -1.44 | 3.80E-03 | 2.86E-02 |
| ssc-mir-450a-5p | 35 | -0.94 | -1.92 | 4.04E-03 | 2.99E-02 |
| ssc-mir-450c-5p | 57 | -0.85 | -1.81 | 4.35E-03 | 2.99E-02 |
| ssc-mir-7134-5p | 106 | -0.58 | -1.49 | 4.24E-03 | 2.99E-02 |
| ssc-mir-9-1-3p | 8 | 1.58 | 2.99 | 4.60E-03 | 2.99E-02 |
| ssc-mir-99b-5p | 10899 | -1.06 | -2.08 | 6.29E-03 | 4.04E-02 |
BaseMean: normalized mean read count for all animals; Log2FC: log2 fold change. FC: fold change; Padj: p-value adjusted for multiple testing (Benjamini and Hochberg as default by DESeq2) Significance cut off is padj = 0.05. A positive fold change indicates that the miRNA is up regulated in obesity and a negative indicate down regulation.