Table 1. Overview of software tools to infer pairwise interactions from datasets in continuous or categorical variables with maximum-entropy/GGM-based methods.

Data type	Method	Name	Output	Link
categorical	mean-field	DCA, mfDCA	DI-score	[76,77]
	pseudolikelihood maximization	plmDCA	APC-FN-score	[78–80]
	pseudolikelihood maximization	Gremlin	Gremlin-score	[81]
	sparse maximum-likelihood	Psicov	Psicov-score	[82]
continuous	sparse maximum-likelihood	glasso	partial correlations	[83]
	ℓ 2-regularized maximum-likelihood	scout	partial correlations	[84]
	shrinkage	corpcor, GeneNet	partial correlations	[85,86]