Skip to main content
. 2015 Jun 12;6(8):5006–5015. doi: 10.1039/c5sc01238d

Table 3. T m and ΔG310rec values of Invader probes used in the nd-FISH study a .

Invader Sequence T mT m] (°C)
ΔG310rec (kJ mol–1)
5′-Inv:cDNA 3′-Inv:cDNA Invader dsDNA target
INV1 5′-Cy3-AGCCCUGUGCCCTG 69.5 [+9.0] 74.5 [+14.0] 58.0 [–2.5] 60.5 –46
        3′-TCGGGACACGGGAC-Cy3
 
INV2 5′-Cy3-CCUGUGCCCTG 59.5 [+9.0] 65.5 [+15.0] 48.0 [–2.5] 50.5 –30
        3′-GGACACGGGAC-Cy3
 
INV3 5′-Cy3-CCUGTGCCCTG 59.0 [+8.5] 64.0 [+13.5] 47.0 [–3.5] 50.5 –24
        3′-GGACACGGGAC-Cy3
 
INV4 5′-Cy3-AGCCCUGTGCCCTG 69.5 [+9.0] 75.5 [+15.0] 61.5 [+1.0] 60.5 –29
        3′-TCGGGACACGGGAC-Cy3

aΔT m = change in T m values relative to corresponding unmodified and unlabeled reference duplex. For experimental details see Table 1. A, C and U denote 2′-O-(pyren-1-yl)methyladenosine,47 2′-O-(pyren-1-yl)methylcytidine47 and 2′-O-(pyren-1-yl)methyluridine (monomer X), respectively.