Skip to main content
. 2015 Jul 31;10(7):e0134375. doi: 10.1371/journal.pone.0134375

Table 2. Oligonucleotide primers used.

Target Primer name Primer sequence Citation
Vertebrate cyt b Cytb For 5'-CCC CTC AGA ATG ATA TTT GTC CTC A-3' [7,13]
Cytb Rev 5'-CAT CCA ACA TCT CAG CAT GAT GAA A-3'
Vertebrate 16S Vert 16S For 5'-GAG AAG ACC CTR TGG ARC TT-3' -
Vert 16S Rev 5'-CGC TGT TAT CCC TAG GGT A-3'
Phlebovirus Phebo F1 5'-AGT TTG CTT ATC AAG GGT TTG ATG C-3' [14]
Phlebo F2 5'-GAG TTT GCT TAT CAA GGG TTT GAC C-3'
Phlebo R 5'-CCG GCA AAG CTG GGG TGC AT-3'
Orthobunyavirus BUN F 5'-CTG CTA ACA CCA GCA GTA CTT TTG AC-3' [14]
BUN R 5'-TGGAGGGTAAGACCATCGTCAGGAACTG-3'
Alphavirus Vir 2052 F 5'-TGG CGC TAT GAT GAA ATC TGG AAT GTT-3' [15]
Vir 2052 R 5'-TAC GAT GTT GTC GTC GCC GAT GAA-3'
Flavivirus 1NS5F 5'-GCA TCT AYA WCA YNA TGG G-3' [16]
1NS5R 5'-CCA NAC NYN RTT CCA NAC-3'
2NS5F 5'-GCN ATN TGG TWY ATG TGG-3'
2NS5R 5'-TRT CTT CNG TNG TCA TCC-3'