Table 2.
Bonding analyses for adenine—thymine small analogs A“T” and a“t”.[a]
| A“T” | A“T” at R[sp3][b] | a“t′′ | a”t′ at R[sp2][b] | |||
|---|---|---|---|---|---|---|
| Distances [Å] | ||||||
| N(H)⋅⋅⋅O | 2.88 | 3.09 | 3.09 | 2.88 | ||
| N⋅⋅⋅(H)N | 2.90 | 3.14 | 3.14 | 2.90 | ||
| Bond energy [kcal mol−1] | ||||||
| ΔE | −16.1 | −14.4 | −8.2 | −6.7 | ||
| ΔEprep | 1.8 | 1.8 | 0.7 | 0.7 | ||
| ΔEint | −17.9 | −16.2 | −8.9 | −7.4 | ||
| ΔEPauli | 32.3 | 15.0 | 16.4 | 34.3 | ||
| ΔVelstat | −28.4 | −18.5 | −14.4 | −23.8 | ||
| ΔEdisp | −3.4 | −2.7 | −3.4 | −4.2 | ||
| ΔEoi | −18.5 | −10.0 | −7.5 | −13.7 | ||
| ΔEσ | −16.6 | −8.9 | ||||
| ΔEπ | −1.9 | −1.1 | ||||
| Gross populations: N(H)⋅⋅⋅O [e−] | ||||||
| σLUMO+1 of A“ | 0.02 | 0.02 | LUMO+1 of a” | 0.01 | 0.01 | |
| σLUMO of A“ | 0.01 | 0.01 | LUMO of a” | 0.01 | 0.02 | |
| σHOMO of T“ | 1.95 | 1.97 | HOMO of t” | 2.00 | 2.00 | |
| σHOMO−1 of T“ | 2.00 | 2.00 | HOMO−1 of t” | 1.98 | 1.96 | |
| Gross populations: N⋅⋅⋅(H)N [e−] | ||||||
| σLUMO+1 of T“ | 0.04 | 0.03 | LUMO+1 of t” | 0.02 | 0.02 | |
| σLUMO of T“ | 0.03 | 0.02 | LUMO of t” | 0.01 | 0.01 | |
| σHOMO of A“ | 1.91 | 1.94 | HOMO of a” | 1.95 | 1.93 | |
| σHOMO−1 of A“ | 2.00 | 2.00 | HOMO−1 of a” | 1.99 | 1.99 | |
| Orbital energies of A“ [eV] | Orbital energies of a” [eV] | |||||
| σLUMO+1 | 0.29 | LUMO+1 | 0.30 | |||
| σLUMO | −0.39 | LUMO | −0.24 | |||
| σHOMO | −5.80 | HOMO | −5.31 | |||
| σHOMO−1 | −10.86 | HOMO−1 | −5.60 | |||
| Orbital energies of T“ [eV] | Orbital energies of t” [eV] | |||||
| σLUMO+1 | 0.18 | LUMO+1 | 0.41 | |||
| σLUMO | −0.64 | LUMO | −0.49 | |||
| σHOMO | −5.85 | HOMO | −5.77 | |||
| σHOMO−1 | −9.80 | HOMO−1 | −6.54 | |||
| Overlap < Α“|Τ” > for N(H)⋅⋅⋅O | Overlap < a“|t” > for N(H)⋅⋅⋅O | |||||
| <σLUMO+1|σHOMO> | 0.11 | −0.10 | <LUMO+1|HOMO−1> | −0.08 | −0.08 | |
| <σLUMO|σHOMO> | 0.09 | −0.08 | <LUMO|HOMO−1> | −0.12 | −0.11 | |
| Overlap < Α“|Τ” > for N⋅⋅⋅(H)N | Overlap < a“|t” > for N⋅⋅⋅(H)N | |||||
| <σHOMO|σLUMO+1> | 0.27 | 0.26 | <HOMO|LUMO+1> | −0.15 | 0.14 | |
| <σHOMO|σLUMO> | 0.23 | 0.21 | <HOMO|LUMO> | 0.10 | −0.10 | |
[a] Energies and geometries computed at BLYP-D3(BJ)/TZ2P level of theory: A“T” in Cs symmetry, and a“t” in C1 symmetry (chair conformation). [b] A“T” has been elongated to the distance of a“t”, R(sp3), and a“t” compressed to the distance of A“T”, R(sp2).