Table 2.

Commonly regulated GO terms in leaf and root

Differentially regulated GO terms in leaf and root			p value
GO annotation	GO terms	Leaf	Root
GO:0006950	Response to stress	0.0006	0.0058
GO:0009725	Response to hormone stimulus	0.0002	0.0049
GO:0009644	Response to high light intensity	0.0021	0.0009
GO:0009408	Response to heat	0.0047	0.0012
GO:0009266	Response to temperature stimulus	0	0
GO:0009808	Lignin metabolic process	0	0.0017
GO:0042221	Response to chemical stimulus	0	0
GO:0006720	Isoprenoid metabolic process	0.029	0.0341
GO:0009719	Response to endogenous stimulus	0.0358	0.0296
GO:0009725	Response to hormone stimulus	0.0361	0.0122
GO:0008610	Response to lipid metabolism	0.0359	0.00165
GO:0009628	Response to abiotic stimulus	0.0053	0.002
GO:0050896	Response to stimulus	0.0017	0.0014
GO:0051716	Cellular response to stimulus	0.0021	0.0032
GO:0032268	Regulation of cellular protein metabolic process	0.0029	0.0065
GO:0009314	Response to radiation	0.0024	0.0067
GO:0042221	Response to chemical stimulus	0.00032	0.0009
GO:0042254	Ribosome biogenesis	0.004	0.001
GO:0050896	Response to stimulus	0	0.008
GO:0034470	ncRNA processing	0	0.002
GO:0043412	Biopolymer modification	0	0
GO:0043687	Post-translational protein modification	0	0
GO:0006464	Protein modification process	0.0138	0.002
GO:0006793	Phosphorus metabolic process	0	0
GO:0006796	Phosphate metabolic process	0.0165	0.0114
GO:0008152	Metabolic process	0.0113	0
GO:0016072	rRNA metabolic process	0.0117	0
GO:0006261	DNA-dependent DNA replication	0.0022	0
GO:0006364	rRNA processing	0.013	0.0008
GO:0006952	Defense response	0	0
GO:0051704	Multi-organism process	0.0055	0
GO:0007166	Cell surface receptor linked signal transduction	0.0054	0
GO:0008283	Cell proliferation	0.0023	0.0062