Table 3.
Binding energy and interactions across different crenactin and actin interfaces
Measurement | 4BQL_ACs | 4BQL_AD | 4BQL_BC | 4BQL_BDs | 3J8I | 3J8A |
Rosetta | ||||||
Binding energy (dG_separated), REU | −29.83 | −27.85 | −37.15 | −25.35 | −16.26 | −16.07 |
PDBePISA | ||||||
Solvation energy (ΔiG), kcal/mol | −13.70 | −12.60 | −16.80 | −15.1 | −16.60 | −15.10 |
No. of H bonds | 16 | 17 | 14 | 13 | 5 | 8 |
No. of salt bridges | 1 | 1 | 0 | 0 | 4 | 10 |
Interface area, Å2 | 1,124.6 | 1,113.7 | 1,269.6 | 1,099.2 | 1,149.0 | 1,093.2 |
The binding energy (dG_separated) was calculated with Rosetta for the relaxed interface structures. The binding energy ΔiG, the numbers of hydrogen bonds and salt bridges across the different interfaces, and the interface area were determined using the PISA webserver. REU, Rosetta energy units.