Table 3.
Potential targets of the identified known miRNAs from Malus hupehensis leaves by degradome analysis
| miRNA | Target protein | Target function | At Locus | Accession ID |
|---|---|---|---|---|
| mdm-miR156 | Squamosa promoter-binding protein-like | transcription factor | AT1G69170.1 | MDP0000119458 ;MDP0000778465;MDP0000589558 |
| (SBP domain) transcription factor family protein | MDP0000142582; MDP0000146640; MDP0000171877 | |||
| MDP0000176265 ;MDP0000193702; MDP0000210138 | ||||
| MDP0000246046 ;MDP0000263766 | ||||
| mdm-miR156 | squamosa promoter binding protein-like 2(SPL2) | transcription factor | AT5G43270.1 | MDP0000155354 |
| mdm-miR156 | squamosa promoter binding protein-like 9(SPL9) | transcription factor | AT2G42200.1 | MDP0000297978;MDP0000322647 |
| mdm-miR156 | acyl-CoA synthetase 5 | AT1G62940.1 | MDP0000249364 | |
| mdm-miR159 | myb domain protein 65 | transcription factor | AT3G11440.1 | MDP0000147309 |
| mdm-miR160 | auxin response factor 16 | transcription factor | AT4G30080.1 | MDP0000131481; MDP0000221322; MDP0000750392 |
| mdm-miR160 | auxin response factor 17 | transcription factor | AT1G77850.1 | MDP0000232116; MDP0000256621 |
| mdm-miR160 | Co-chaperone GrpE family protein | AT1G36390.1 | MDP0000273491 | |
| mdm-miR162 | LETM1-LIKE protein | AT3G11560.2 | MDP0000187512 | |
| mdm-miR164 | NAC domain containing protein 1 | AT1G56010.2 | MDP0000298182; MDP0000528658 | |
| mdm-miR166 | homeobox gene 8 | AT4G32880.1 | MDP0000005879; MDP0000126553 | |
| mdm-miR166 | Homeobox-leucine zipper family protein/ lipid- | AT2G34710.1 | MDP0000050082;MDP0000943529 | |
| binding START domain-containing protein | AT5G60690.1 | MDP0000236500; MDP0000242861; MDP0000426630 | ||
| AT1G52150.3 | MDP0000251484 | |||
| AT1G52150.1 | MDP0000313059 | |||
| mdm-miR167 | auxin response factor 6 | transcription factor | AT1G30330.2 | MDP0000319957; MDP0000550049 |
| AT1G30330.1 | MDP0000153538 | |||
| mdm-miR167 | auxin response factor 8 | transcription factor | AT5G37020.1 | MDP0000137461; MDP0000232417 |
| mdm-miR167 | auxin response factor 19 | transcription factor | AT1G19220.1 | MDP0000268306 |
| mdm-miR168 | Stabilizer of iron transporter SufD/ Polynucleotidyl transferase | AT1G48410.1 | MDP0000069525; MDP0000161046; MDP0000305971 | |
| mdm-miR169 | nuclear factor Y, subunit A7 | transcription factor | AT1G30500.2 | MDP0000164531; MDP0000183865 |
| AT1G30500.1 | MDP0000279028 | |||
| mdm-miR169 | nuclear factor Y, subunit A9 | transcription factor | AT3G20910.1 | MDP0000146933 |
| mdm-miR169 | translocation protein-related | AT5G12840.1 | MDP0000296077 | |
| mdm-miR171 | GRAS family transcription factor | transcription factor | AT4G00150.1 | MDP0000151144 ;MDP0000275704 ;MDP0000274120 |
| AT2G45160.1 | MDP0000784909 | |||
| mdm-miR172 | related to AP2.7 | transcription factor | AT2G28550.3 | MDP0000163645; MDP0000181606; MDP0000200319; |
| MDP0000296716 | ||||
| mdm-miR172 | Integrase-type DNA-binding superfamily protein | transcription factor | AT4G36920.1 | MDP0000137561 |
| mdm-miR319 | myb domain protein 65 | transcription factor | AT3G11440.1 | MDP0000147309 |
| mdm-miR3627 | AT hook motif DNA-binding family protein | AT2G45850.1 | MDP0000133746;MDP0000231744 | |
| mdm-miR3627 | autoinhibited Ca2+ − ATPase, isoform 8 | AT5G57110.1 | MDP0000258197 | |
| mdm-miR390 | exocyst subunit exo70 family protein H7 | AT5G59730.1 | MDP0000145463 | |
| mdm-miR391 | Transmembrane proteins 14C | AT3G43520.1 | MDP0000207199; MDP0000244081 | |
| mdm-miR393 | F-box/RNI-like superfamily protein | AT3G62980.1 | MDP0000125975; MDP0000498419 | |
| mdm-miR393 | auxin signaling F-box 2 | AT3G26810.1 | MDP0000203334; MDP0000469943 | |
| mdm-miR393 | auxin signaling F-box 3 | AT1G12820.1 | MDP0000268652 | |
| mdm-miR395 | ATP sulfurylase 1 | AT3G22890.1 | MDP0000263161 | |
| mdm-miR398 | DC1 domain-containing protein | AT1G60420.1 | MDP0000152817 ;MDP0000308890 | |
| mdm-miR398 | GroES-like zinc-binding dehydrogenase family protein | AT5G43940.1 | MDP0000193167 | |
| mdm-miR5225 | autoinhibited Ca2+ − ATPase, isoform 8 | AT5G57110.1 | MDP0000258197 | |
| mdm-miR535 | Papain family cysteine protease(RD19) | AT4G39090.1 | MDP0000189200 | |
| mdm-miR858 | myb domain protein 3 | transcription factor | AT1G22640.1 | MDP0000184538 |
| mdm-miR858 | myb domain protein 4 | transcription factor | AT4G38620.1 | MDP0000031172 |
| mdm-miR858 | myb domain protein 5(MYB5) | transcription factor | AT3G13540.1 | MDP0000133817; MDP0000143276; |
| MDP0000226215;MDP0000253904 | ||||
| mdm-miR858 | myb domain protein 7 | transcription factor | AT2G16720.1 | MDP0000210851 |
| mdm-miR858 | myb domain protein 12 | transcription factor | AT2G47460.1 | MDP0000140609 ;MDP0000887107 |
| mdm-miR858 | myb domain protein 66 | AT5G14750.1 | MDP0000124555 | |
| mdm-miR858 | Duplicated homeodomain-like superfamily protein | AT5G35550.1 | MDP0000318013; MDP0000437717 | |
| mdm-miR858 | high response to osmotic stress 10 | AT1G35515.1 | MDP0000931057 |