Table 1.
Numbers of genes in the primary predicted host–fungal PPI networks belonging to the cellular component GO filter terms.
(A) Filter terms for host side | |||||
---|---|---|---|---|---|
GO slim cellular component terms | Number of genes in Homo sapiens | Number of genes in Mus musculus | |||
Extracellular region | 2,566 | 783 | |||
Plasma membrane | 2,310 | 2,024 | |||
Extracellular space | 631 | 419 | |||
Endosome | 476 | 421 | |||
Lysosome | 306 | 247 | |||
Cilium | 138 | 202 | |||
Proteinaceous extracellular matrix | 115 | 132 | |||
External encapsulating structure | 3 | 5 | |||
Only other GO terms | 6,531 | 7,645 | |||
No GO terms | 902 | 361 | |||
(B) Filter terms for fungi side | |||||
GO slim cellular component terms | Number of genes in Aspergillus fumigatus | Number of genes in Candida albicans | |||
Plasma membrane | 270 | 236 | |||
Extracellular region | 94 | 33 | |||
Cell wall | 52 | 74 | |||
Only other GO terms | 3214 | 3160 | |||
No GO terms | 0 | 1114 | |||
(C) Sizes of host–fungi PPI networks after localization refinement | |||||
Host species | Pathogen species | Number of host–pathogen interactions | Number of host interactors | Number of pathogen interactors | |
H. sapiens | A. fumigatus | 17,853 (8.4%) | 363 (10.2%) | 2,393 (21.2%) | |
H. sapiens | C. albicans | 15,330 (4.3%) | 301 (6.6%) | 2,123 (19.2%) | |
M. musculus | A. fumigatus | 9,284 (4.5%) | 337 (9.4%) | 1,572 (14.9%) | |
M. musculus | C. albicans | 8,055 (2.4%) | 282 (6.2%) | 1,376 (13.3%) |