TABLE 1.
Isolate | Genome length (nt) | Motif, position in genome (nt) ofb: |
||||||
---|---|---|---|---|---|---|---|---|
TATA box | TATA box Sp1 site | Cap site | Kozak, ORF1 | Coding region | Poly(A) | GC-rich region | ||
TA278a | 3,853 | ATATAA, 85–90 | GGGCGG, 171–176 | GGGGCAATT, 209–217 | CACCATGG, 585–592 | 263–3074 | AATAAA, 3073–3078 | 3732–3853 |
VGA00120.1 | 3,621 | ATATAA, 137–142 | GGGCGG, 230–235 | GGGGCAATT, 255–263 | GCTCATGG, 728–735 | 163–3088 | AATAAA, 3084–3089 | 3554–3621 |
VGA00123.3 | 3,907 | ATAAGA, 132–137 | GGGCGG, 217–222 | GGGGCAATT, 268–276 | GCTCATGG, 729–736 | 316–3253 | AATAAA, 3244–3249 | 3769–3907 |
VGA00154.2 | 3,812 | ATAAAA, 131–136 | GGGCGG, 216–221 | GGGGCAATT, 254–262 | CGCCATGG, 689–696 | 313–3235 | AATAAA, 3226–3231 | 3753–3812 |
VWP00522.2 | 3,612 | ATAAGA, 126–131 | GGGCGG, 213–218 | GGGGCAATT, 252–260 | CAACATGC, 562–569 | 303–2761 | AATAAA, 2969–2974 | 3531–3612 |
VWP00522.11 | 3,774 | ATATAA, 132–137 | GGGCGG, 215–220 | GGGGCCTAT, 253–261 | TGGTGTGG, 657–664 | 318–3243 | AATAAA, 3234–3239 | 3695–3774 |
The prototype TTV isolate TA278 (GenBank accession no. AB017610) was used as a reference.
Underlining indicates differences relative to canonical sequences.