Table 1. Strains used in this study.
Scientific name | Strain no. | Source*1 | # Contigs | Total length(bases) | N50(bases) | Maximum(bases) | Average (bases) |
---|---|---|---|---|---|---|---|
Trichosporon asahii | JCM 2466 | nail of a psoriasis patient, Fukuoka, Japan | 1,262 | 24,495,558 | 77,499 | 335,598 | 19,410 |
Trichosporon brassicae | JCM 1599 | cabbage, T. Nakase, Tokyo, Japan | 988 | 23,545,754 | 46,311 | 203,527 | 23,832 |
Trichosporon coremiiforme | JCM 2938 | lesion on the head of a farmer, Costa Rica | 3,232 | 42,172,195 | 26,704 | 150,431 | 13,048 |
Trichosporon cutaneum | JCM 1462 | skin lesion | 3,076 | 22,615,927 | 14,018 | 146,985 | 7,352 |
Trichosporon dermatis | JCM 11170 | infected human skin, Tübingen, Germany | 1,016 | 23,295,971 | 46,612 | 233,244 | 22,929 |
Trichosporon faecale | JCM 2941 | human feces, A.C. Batista | 551 | 24,482,466 | 94,928 | 366,476 | 44,433 |
Trichosporon gamsii | JCM 9941 | moist humus around roots, W. Gams, Sierra Nevada de Santa Marta, Colombia | 7,995 | 25,860,364 | 17,022 | 114,205 | 3,235 |
Trichosporon gracile | JCM 10018 | sour milk, Germany | 1,672 | 24,039,830 | 29,596 | 175,298 | 14,378 |
Trichosporon inkin | JCM 9195 | human skin with tinea cruris caused by Trichophyton, L. do Carmo-Sousa | 3,680 | 19,793,539 | 17,312 | 173,610 | 5,379 |
Trichosporon laibachii | JCM 2947 | soil | 3,380 | 30,595,110 | 21,469 | 138,973 | 9,052 |
Trichosporon ovoides | JCM 9940 | hair of a white piedra patient, A. Lasagni | 3,336 | 39,800,440 | 45,378 | 382,552 | 11,931 |
Trichosporon porosum | JCM 1458 | exudate of English yew (Taxus baccata), Hamburg, Germany | 1,838 | 25,943,715 | 30,685 | 146,128 | 14,115 |
Trichosporon scarabaeorum | JCM 12198 | gut of a larval scarab beetle, South Africa | 2,755 | 30,549,951 | 30,687 | 133,129 | 11,089 |
Bullera koratensis | JCM 12878 | leaf of plant, Thailand | 1,443 | 25,088,877 | 33,905 | 163,727 | 17,387 |
Cryptococcus curvatus | JCM 1532 | sputum of a patient with tuberculosis | 531 | 18,156,997 | 81,043 | 240,381 | 34,194 |
Cryptococcus tepidarius | JCM 11965 | water in stream, Owakudani, Hakone, Japan | 3,328 | 22,106,340 | 11,260 | 65,094 | 6,643 |
Vanrija humicola | JCM 1457 | heath soil in Switzerland | 3,111 | 22,380,125 | 15,011 | 154,669 | 7,194 |
*1 data from [2, 5] and http://jcm.brc.riken.jp/en/catalogue_e.