Table 3. Correlation between coverage of repeat family and gene coverage on every chromosome.
| Solanum tuberosum | |||
| Repeat Type | PCC | T-statistic | P-value |
| DNA/TcMar-Stowaway | 0.9620917122 | 11.7000058689 | 1.51E-007 |
| DNA | 0.9596712079 | 11.3219072983 | 2.11E-007 |
| DNA/Harbinger | 0.9347881483 | 8.7282979872 | 2.83E-006 |
| DNA/PIF-Harbinger | 0.9334391543 | 8.6299382074 | 3.16E-006 |
| DNA/TcMar-Pogo | 0.8493600038 | 5.3371237214 | 2.38E-004 |
| DNA/MULE-MuDR | 0.8462555467 | 5.2680784776 | 2.65E-004 |
| DNA/hAT-Tag1 | 0.7845382608 | 4.1962606691 | 1.49E-003 |
| DNA/hAT-Tip100 | 0.7474276283 | 3.7314099879 | 3.32E-003 |
| SINE/tRNA | 0.7375728291 | 3.622641389 | 4.01E-003 |
| DNA/hAT-Ac | 0.6500795482 | 2.8374338255 | 1.62E-002 |
| SINE | 0.6215187549 | 2.6312820978 | 2.34E-002 |
| LINE/RTE-BovB | 0.6028804797 | 2.5062037609 | 2.92E-002 |
| LTR/Caulimovirus | -0.5729613412 | 2.3186171403 | 4.07E-002 |
| LTR/Copia | 0.4799071858 | 1.8142449766 | 9.70E-002 |
| Satellite | -0.4216051498 | 1.542057425 | 1.51E-001 |
| Retroposon | 0.3105955013 | 1.0837275421 | 3.02E-001 |
| RC/Helitron | -0.2474331189 | 0.8469796697 | 4.15E-001 |
| LTR/Gypsy | -0.2390211119 | 0.8164074281 | 4.32E-001 |
| LINE/L1 | 0.1577892178 | 0.5299666206 | 6.07E-001 |
| DNA/CMC-EnSpm | -0.0200565794 | 0.0665335318 | 9.48E-001 |
| Solanum lycopersicum | |||
| Repeat Type | PCC | T-statistic | P-value |
| DNA/Harbinger | 0.9544544177 | 10.6100060709 | 4.08E-007 |
| DNA/TcMar-Stowaway | 0.9455427665 | 9.6345035426 | 1.07E-006 |
| LTR/Gypsy | -0.9252673099 | 8.0902647726 | 5.87E-006 |
| DNA | 0.8976427794 | 6.7551253297 | 3.14E-005 |
| DNA/PIF-Harbinger | 0.8687875924 | 5.818921915 | 1.16E-004 |
| DNA/hAT-Tip100 | 0.7270065462 | 3.511652681 | 4.87E-003 |
| DNA/TcMar-Pogo | 0.7137034022 | 3.379389004 | 6.15E-003 |
| DNA/MULE-MuDR | 0.612600281 | 2.5705764119 | 2.60E-002 |
| SINE/tRNA | 0.6050936111 | 2.5207028186 | 2.84E-002 |
| DNA/hAT-Ac | 0.6041348528 | 2.5144103905 | 2.88E-002 |
| DNA/hAT-Tag1 | 0.5995442809 | 2.4845184335 | 3.03E-002 |
| SINE | 0.5610626717 | 2.2479999158 | 4.61E-002 |
| LINE/RTE-BovB | 0.3807148849 | 1.3655225463 | 1.99E-001 |
| LINE/L1 | -0.3745541236 | 1.3397850768 | 2.07E-001 |
| LTR/ERV1 | 0.3642191812 | 1.2970698665 | 2.21E-001 |
| LTR/Copia | -0.3101460642 | 1.0819923379 | 3.02E-001 |
| RC/Helitron | 0.3012442711 | 1.0477870658 | 3.17E-001 |
| DNA/CMC-EnSpm | 0.2752760876 | 0.9496781064 | 3.63E-001 |
| LTR/Caulimovirus | -0.2157779953 | 0.7329204594 | 4.79E-001 |
| Retroposon | -0.0845703336 | 0.2814965229 | 7.84E-001 |
| Satellite | 0.0297194853 | 0.0986119407 | 9.23E-001 |