Table 3. Summary of characters of the nine Gordonia phage genomes.
Phage name | Average coverage (fold) | Total read count | Genome size (bp) | G+C content (mol %) | No. putative tRNA | No. putative genes | No. putative genes in forwards orientation | No. functionally annotated putative genes | No. novel genes | No. palindromes | No. direct repeats | No. inverted repeats |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GMA2 a c | 1, 212 | 336, 750 | 103, 424 | 53.4 | 16 | 126 | 42 | 42 | 62 | 7 | 22 | 10 |
GMA3 b e d | 1, 200 | 677, 981 | 77, 779 | 51.3 | 0 | 104 | 32 | 27 | 47 | 16 | 18 | 8 |
GMA4 b e d | 1, 981 | 716, 641 | 45, 537 | 66.4 | 1 | 68 | 61 | 22 | 11 | 6 | 40 | 31 |
GMA5 b f d | 6, 793 | 930, 480 | 17, 562 | 66.4 | 0 | 28 | 24 | 14 | 4 | 11 | 28 | 13 |
GMA6 a c | 247 | 55, 269 | 83, 324 | 58.2 | 0 | 115 | 109 | 38 | 68 | 1 | 20 | 3 |
GMA7 b c | 1, 603 | 947, 843 | 73, 419 | 56.6 | 1 | 101 | 32 | 23 | 5 | 18 | 14 | 5 |
GRU3 b e d | 520 | 89, 131 | 17, 727 | 66.5 | 0 | 26 | 23 | 12 | 6 | 3 | 42 | 16 |
GTE6 a c | 915 | 141, 321 | 56, 982 | 67.8 | 0 | 86 | 86 | 23 | 49 | 3 | 252 | 87 |
GTE8 b c | 1, 605 | 777, 336 | 67, 617 | 66.0 | 0 | 94 | 67 | 23 | 22 | 5 | 48 | 36 |
a sequenced using 454,
b sequenced using Illumina,
c reads assembled using CLC workbench (v6.5.1),
d reads assembled using CLC workbench (v7.5.1),
e reads assembled using Spades (v3.1.0),
f reads assembled using ABySS (v1.3.7).