Table 1.
Transcription factors (TFs) with altered expression by orthotopictracheal transplantation in mice
| Transcription Factor/Cis-element | Description | D14 | D28 |
|---|---|---|---|
| CdxA/NKX2 | Caudal-type homeodomain protein/cardiac-specific homeo box | 7.2284311 | 19.108173 |
| Freac-2 (1) | forkhead box F2 (mouse) | 5.8721234 | 13.101664 |
| TGT3 | TTF-1 (Thyroid Transcription Factor 1) binding element | 3.1763948 | 6.9544256 |
| Pur-1 | MYC-associated zinc finger protein (purine-binding transcription factor) | 3.5535206 | 8.5973831 |
| AP3 | activator protein 3 | 2.1459901 | 6.3927236 |
| GATA1 (2) | 3.7750988 | 11.853023 | |
| Freac-7 | forkhead box L1 | 5.1269967 | 12.819287 |
| HNF-3 (a, b, g) | hepatocyte nuclear factor 3 (a, b, g) | 2.8391372 | 11.045721 |
| GBF1/2/3/HY5 | G-box binding factor 1 | 2.323852 | 5.0370897 |
| LF-A1 (2) | Liver-specific transcription factor | 3.7001827 | 13.529127 |
| myc-CF1 | common factor 1; CF1 | 2.6879086 | 10.570438 |
| GKLF | gut-enriched Krueppel-like factor; EZF; epithelial zinc-finger | 3.3945985 | 8.2673506 |
| myc-PRF | A transcriptional repressor of c-myc | 3.6417267 | 20.370261 |
| PUR | Pur factor | 3.0497692 | 6.2351248 |
| LF-B2 | liver-specific factors | 4.9896092 | 19.762222 |
| Myc/Max | myc-associated factor X | 64.628873 | 866.443 |
| Elf-1 | E74-like factor 1, a novel Ets family member | 3.5593017 | 20.000568 |
| RORE | RAR-related orphan receptor | 2.6153743 | 7.3188295 |
| Smad SBE | MADH: MAD, mothers against decapentaplegic homolog | 480.48037 | 1234.3028 |
| Ikaros | Ikaros protein (zinc-finger protein) | 7.3938934 | 15.171127 |
| SIF1 | Sucrase-isomaltase (SI) is an enterocyte-specific gene which exhibits a complex pattern of expression during intestinal development and in the adult intestinal mucosa. SIF1SI promoter 1 | 3.279225 | 8.9836184 |
| C/EBPa/g | CCAAT/enhancer binding protein alpha, gamma | 7.9115469 | 16.866061 |
| DE I | Rat DE1 element from albumin gene | 17.987428 | 38.570058 |
| IRF-1, IRF-2 | interferon regulatory factor 1/2 binding element | 13.776668 | 27.660436 |
| XBP1, X2BP | X-box-binding protein 1 | 18.920963 | 46.028576 |
| CD28RC, NF-IL2B | T-cell accessory molecule CD28 | 23.549489 | 92.518538 |
| LR1 | LR1 is a 106-kDa sequence-specific DNA-binding protein first identified as a potential regulator of immunoglobulin class switch recombination in B lymphocytes | 14.937349 | 32.436226 |
| SIF3 | SI promoter 3 | 5.5794092 | 18.138106 |
| ZNF174 | zinc-finger protein 174 | 10.194376 | 20.948212 |
| SPERM1 | A Pou domain gene transiently expressed immediately prior to meiosis I in the male germ cell | 2.620666 | 6.0012397 |
| Pax2 | paired box gene 2 (gene5/gene8) | 4.9965179 | 14.07995 |
| HLF | hepatic leukemia factor | 3.0952976 | 13.906064 |
| NRF-1 | nuclear respiratory factor 1 | 8.9915515 | 23.811503 |
| AAF | an IFN-gamma-regulated DNA-binding factor | 17.684316 | 46.073765 |
| CBFB | CCAAT-binding factor | 21.862635 | 44.059122 |
| FKHR | forkhead box O1A (rhabdomyosarcoma) human | 174.26371 | 460.03887 |
| CBF | mouse CCAAT-binding factor, CP1 (human, rat); NF-Y | 2.5223519 | 10.014016 |
| PO-B | Stimulatory factor, binds at -15 in proopiomelanocortin (POMC) gene | 5.8450886 | 11.857744 |
| WAP BP | whey acidic protein | 2.9996083 | 6.523301 |
| AFP1 | alpha-fetoprotein | 4.7012304 | 9.7924955 |
| HOXA4 | Chox-1.4; Chox1.4; Hox-1.4 (mouse) | 8.4866902 | 39.80197 |
| IL-6 RE-BP | interleukin-6 response element binding protein | 3.2893583 | 12.353047 |
D14 and D28 were Protein/DNA array expression folds compared with syngeneic control group.