Table 3.
Alleles of tcdA, corresponding probes, GenBank entries and typing data
| tcdA allele | Reference sequence | Other GenBank entries | Hybridization pattern | Associated slpA alleles | Associated ribotypes | Associated clades | Associated sequence types | Associated hybridization profiles |
|---|---|---|---|---|---|---|---|---|
| tcdA R20291 | FN545816.1 | AAML04000007.1, ABFD02000006.1, ABHD02000008.1, ABHE02000016.1, ABHF02000018.1, ABHG02000011.1, ABKJ02000013.1, ABKK02000013.1, ABKL02000008.1, ADDE01000337.1, ADNX01000011.1, ADVM01000023.1, AGAC01000012.1, AM180355.1, AY238985.1, FN538970.1, FN665653.1, FN665654.1, FN668941.1, FN668944.1, M30307.1, X51797.1, X92982.1 | probe-1132+ probe-1134+ probe-1135+ probe-1247 | slpA 23m63, slpA 79685, slpA DJNS0578, slpA JND08037, slpA JND08162, slpA JND09041, slpA MRY060211, slpA R12885, slpA R13540, slpA R13711, slpA 630, s lpA 6407, slpA 6503 trunc., slpA BI9, slpA J9952 trunc., slpA Kohn, slpA R12884 trunc., slpA R12884, slpA R13541, slpA R20291, slpA-negatives | RT-001, RT-002, RT-005, RT-009, RT-011, RT-012, RT-013, RT-014, RT-015, RT-023, RT-027, RT-029, RT-031, RT-045, RT-046, RT-049, RT-054, RT-056, RT-057, RT-064, RT-070, RT-071, RT-072, RT-078, RT-081, RT-087, RT-094, RT-103, RT-137, RT-150, RT-159, RT-163 | I, II, III, V | ST-01, ST-03, ST-04, ST-08, ST-09, ST-11, ST-17, ST-35, ST-42, ST-45, ST-46, ST-54, ST-55, ST-58 | HP-01, HP-02, HP-03, HP-04, HP-05, HP-06, HP-07, HP-08, HP-09, HP-10, HP-12, HP-13, HP-14, HP-16, HP-17, HP-18, HP-19, HP-20, HP-22, HP-23, HP-24, HP-25, HP-30, HP-31, HP-32, HP-33, HP-34, HP-37, HP-38, HP-39 |
| tcdA CF5 | FN665652.1 | AB012304.1, AF217291.1, AGAA01000013.1, AGAB01000024.1, FN668375.1, Y12616.1 | probe-1132+ probe-1135+ probe-1247 | slpA 6407, slpA CF5, slpA 79685 | RT-17 | I, IV | ST-37, ST-86 | HP-28, HP-35, HP-36 |
| tcdA negative | - | - | none | slpA 1446, slpA 23m63, slpA R13711, slpA 6407, s lpA 6503, slpA Kohn, slpA R13700 | RT-009, RT-010, RT-011, RT-012, RT-015, RT-031, RT-039, RT-049, RT-056, RT-057, RT-070, RT-071, RT-094 | I, ”VI” | ST-03, ST-54, ST-55, ST-58, ST-127dlv | HP-11, HP-15, HP-21, HP-26, HP-27, HP-29, HP-40 |