Table 1.
Sample ID | DNA source | DNA amount |
Average sequencing depth |
% bases covered by at least 20× |
Exome capture rate* |
PCR duplicate rate |
Mapping % |
Mean insert size |
---|---|---|---|---|---|---|---|---|
PBCTNPLT001 | whole blood | 3 µg | 111 | 97.5 | 0.55 | 0.08 | 99.7 | 215 |
PBCTNPLT002 | whole blood | 3 µg | 93 | 96.2 | 0.57 | 0.08 | 99.7 | 206 |
PBCTNPLT003 | whole blood | 3 µg | 92 | 95.9 | 0.57 | 0.06 | 99.7 | 207 |
PBCTNPLT004 | whole blood | 3 µg | 70 | 94.0 | 0.55 | 0.06 | 99.7 | 216 |
PBCTNPLT005 | whole blood | 3 µg | 77 | 95.2 | 0.59 | 0.03 | 99.7 | 208 |
PBCTNPLT001 | whole blood | 1 µg | 74 | 94.3 | 0.42 | 0.30 | 99.6 | 207 |
PBCTNPLT002 | whole blood | 1 µg | 92 | 96.5 | 0.54 | 0.08 | 99.7 | 214 |
PBCTNPLT003 | whole blood | 1 µg | 88 | 95.6 | 0.55 | 0.09 | 99.7 | 212 |
PBCTNPLT004 | whole blood | 1 µg | 79 | 95.8 | 0.56 | 0.06 | 99.7 | 217 |
PBCTNPLT005 | whole blood | 1 µg | 111 | 98.0 | 0.56 | 0.06 | 99.7 | 209 |
PBCTNPLT001 | whole blood | 0.2 µg | 67 | 93.8 | 0.48 | 0.12 | 99.2 | 186 |
PBCTNPLT002 | whole blood | 0.2 µg | 75 | 94.8 | 0.51 | 0.08 | 99.0 | 185 |
PBCTNPLT003 | whole blood | 0.2 µg | 77 | 94.9 | 0.53 | 0.07 | 99.0 | 184 |
PBCTNPLT004 | whole blood | 0.2 µg | 74 | 94.9 | 0.51 | 0.08 | 99.0 | 182 |
PBCTNPLT005 | whole blood | 0.2 µg | 79 | 95.5 | 0.53 | 0.09 | 98.9 | 186 |
PBCTNPLT001 | saliva | 1 µg | 72 | 94.9 | 0.56 | 0.08 | 99.1 | 205 |
PBCTNPLT002 | saliva | 1 µg | 77 | 95.7 | 0.54 | 0.05 | 99.4 | 214 |
PBCTNPLT003 | saliva | 1 µg | 99 | 97.4 | 0.50 | 0.13 | 98.2 | 203 |
PBCTNPLT004 | saliva | 1 µg | 73 | 95.0 | 0.52 | 0.10 | 97.7 | 210 |
PBCTNPLT005 | saliva | 1 µg | 69 | 93.9 | 0.51 | 0.12 | 98.5 | 201 |
The exome capture rate is calculated as the sequenced bases in the capture regions divided by the length sum of all mapped reads.