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. Author manuscript; available in PMC: 2016 Aug 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2015 May 19;24(8):1207–1213. doi: 10.1158/1055-9965.EPI-15-0205

Table 1.

Summary of whole-exome sequencing data statistics

Sample ID DNA source DNA
amount
Average
sequencing
depth
% bases
covered by
at least 20×
Exome
capture
rate*
PCR
duplicate
rate
Mapping
%
Mean
insert size
PBCTNPLT001 whole blood 3 µg 111 97.5 0.55 0.08 99.7 215
PBCTNPLT002 whole blood 3 µg 93 96.2 0.57 0.08 99.7 206
PBCTNPLT003 whole blood 3 µg 92 95.9 0.57 0.06 99.7 207
PBCTNPLT004 whole blood 3 µg 70 94.0 0.55 0.06 99.7 216
PBCTNPLT005 whole blood 3 µg 77 95.2 0.59 0.03 99.7 208

PBCTNPLT001 whole blood 1 µg 74 94.3 0.42 0.30 99.6 207
PBCTNPLT002 whole blood 1 µg 92 96.5 0.54 0.08 99.7 214
PBCTNPLT003 whole blood 1 µg 88 95.6 0.55 0.09 99.7 212
PBCTNPLT004 whole blood 1 µg 79 95.8 0.56 0.06 99.7 217
PBCTNPLT005 whole blood 1 µg 111 98.0 0.56 0.06 99.7 209

PBCTNPLT001 whole blood 0.2 µg 67 93.8 0.48 0.12 99.2 186
PBCTNPLT002 whole blood 0.2 µg 75 94.8 0.51 0.08 99.0 185
PBCTNPLT003 whole blood 0.2 µg 77 94.9 0.53 0.07 99.0 184
PBCTNPLT004 whole blood 0.2 µg 74 94.9 0.51 0.08 99.0 182
PBCTNPLT005 whole blood 0.2 µg 79 95.5 0.53 0.09 98.9 186

PBCTNPLT001 saliva 1 µg 72 94.9 0.56 0.08 99.1 205
PBCTNPLT002 saliva 1 µg 77 95.7 0.54 0.05 99.4 214
PBCTNPLT003 saliva 1 µg 99 97.4 0.50 0.13 98.2 203
PBCTNPLT004 saliva 1 µg 73 95.0 0.52 0.10 97.7 210
PBCTNPLT005 saliva 1 µg 69 93.9 0.51 0.12 98.5 201
*

The exome capture rate is calculated as the sequenced bases in the capture regions divided by the length sum of all mapped reads.