Table 5. Tandem repeats features.

Tandem repeat sequence	Motif Length (nt)	Position	Location
CAGACTCCGTCCGTTAGATTTTGTCAAATTCTGGTCGAGTCGAAC	41	241–359	Inv. repeat
ACGTAACCCTAGCTGCTCTAAGGGACA	27	627–720	Inv. repeat
TGTCGGCCACCCTGACTCTACCCCGCTCCGGCCTGCCCCC	40	4015–4839	Inv. repeat
ATGCATATCATTAAATATGGAGGAGGTTATGGAATGAGGGAAGTCGGCTCCGATTGGTAGTTGGG	73	7949–8347	Inv. repeat
GGTGGATATGGGTGGATGTATGTTTATGCATATCATTAAAAAT* 1	43	8385–8563	Bridging 5’end US and inv.repeat
AAAAGCAAAACACTTGTATAAATTATCCAAT* 2	31	16943–17010	US3 region
GGTTGGGGAGAACGGTCATAATTAGAGGGACCG	33	27528–27703	ORF 21
TATCCGAGTTACTACCCCCCTGTACCTGCTGGAAAT* 3	36	27994–28312	3’end US
TTCCATAACCTCCTCCATATTTAATGATATGCATCTACCTGCCCCAACTACCAATCGGAGCCGACTTCCCTCA	73	28896–29294	Inv. repeats
CGGGGTAGAGTCAGGGTGGCCGACAGGGGGCAGGCCGGAG	40	32404–33228	Inv. repeats
GCTAGGGTTACGTTGTCCCTTAGAGCA	27	36523–36616	Inv. repeats
ATTTGACAAAATCTAACGGACGGAGTCTGGTTCGACTCGACCAGA	45	36884–37002	Inv. repeats
CCCTGGATCGGGCCC	15	38589–38844	ORF 24
ATATATAAATATA	13	62779–62971	UL15b/UL18 region
GACAACTTGAGGAGGAGGTGGTGGGTG	27	100095–100169	UL36
GGATCCTTAAACTAGATCCCTTTACATGTAGTATGTTACTATAAAAC	47	127865–128049	UL45/46 region
GGTGGGGTGATCGGAGGGGTAACCTCTTCT* 4	30	131704–131989	UL44 region

*Presence of mismatches or indels or both in the repeated motifs

¹One mismatch

²Four mismatches and one indel

³One mismatch

⁴One indel

Inv. repeats = Inverted repeats