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. 2015 Aug 5;10(8):e0134911. doi: 10.1371/journal.pone.0134911

Table 2. Most significantly downregulated genes at more than one time point (non-coding RNAs are indicated with *) (Bonferroni-adjusted p-value <0.0001).

Time points Gene symbol Accession number Description
6, 12 and 24h LGALS3 NM_002306 lectin, galactoside-binding, soluble, 3
PDSS2 NM_020381 prenyl (decaprenyl) diphosphate synthase, subunit 2
MAGI3 NM_152900 membrane associated guanylate kinase, WW and PDZ domain containing 3
PSD3 NM_015310 pleckstrin and Sec7 domain containing 3
*lincRNA chr10:114583921–114587485 forward strand
6 and 12h SBF2 NM_030962 SET binding factor 2
XRCC4 NM_022550 X-ray repair complementing defective repair in Chinese hamster cells 4
VAV2 NM_003371 vav 2 guanine nucleotide exchange factor
ROR1 NM_005012 receptor tyrosine kinase-like orphan receptor 1
ERC1 NM_178040 ELKS/RAB6-interacting/CAST family member 1
*lincRNA chr17:67547498–67549996 forward strand
12 and 24h HMG20B NM_006339 high mobility group 20B
TUBA1B NM_006082 tubulin, alpha 1b
SMYD3 NM_022743 SET and MYND domain containing 3
SCFD2 NM_152540 sec1 family domain containing 2
VTI1A NM_145206 vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
PRR4 NM_007244 proline rich 4 (lacrimal)
PARD3 NM_019619 par-3 partitioning defective 3 homolog (C. elegans)
RABGAP1L NM_014857 RAB GTPase activating protein 1-like
TTC28 NM_001145418 tetratricopeptide repeat domain 28
PCCA NM_000282 propionyl CoA carboxylase, alpha polypeptide
MAN1C1 NM_020379 mannosidase, alpha, class 1C, member 1
A4GALT NM_017436 alpha 1,4-galactosyltransferase
MSRA NM_012331 methionine sulfoxide reductase A
ANO4 NM_178826 anoctamin 4
SSBP2 NM_012446 single-stranded DNA binding protein 2
STX8 NM_004853 syntaxin 8
REXO1 NM_020695 REX1, RNA exonuclease 1 homolog (S. cerevisiae)
SH3KBP1 NM_031892 SH3-domain kinase binding protein 1
BBS9 NM_198428 Bardet-Biedl syndrome 9
BCKDHB NM_000056 branched chain keto acid dehydrogenase E1, beta polypeptide
SORCS1 NM_001206572 sortilin-related VPS10 domain containing receptor 1
TPK1 NM_022445 thiamin pyrophosphokinase 1
LINGO2 NM_152570 leucine rich repeat and Ig domain containing 2
FRY NM_023037 furry homolog (Drosophila)
PDE3B NM_000922 phosphodiesterase 3B, cGMP-inhibited
KCNQ2 NM_172109 potassium voltage-gated channel, KQT-like subfamily, member 2
PPIA THC2525667 Peptidylprolyl isomerase A
*lincRNA chr2:7214634–7218011 reverse strand
*lincRNA chr4:79892901–80229698 forward strand
*lincRNA chr18:42263052–42278652 forward strand
*lincRNA chr18:74178337–74203637 forward strand
*lincRNA chr7:125564239–125734564 forward strand
6 and 24h FAM78B NM_001017961 family with sequence similarity 78, member B
VAV3 NM_006113 vav 3 guanine nucleotide exchange factor