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. 2015 Aug 5;10(8):e0134911. doi: 10.1371/journal.pone.0134911

Table 8. Top 50 upregulated genes in DM vs LM under basal conditions (non- coding RNAs are indicated with *) (bonferroni-adjusted p-value <0.0001).

Locus name Accession number Description
MIF NM_002415 macrophage migration inhibitory factor
TTC19* ENST00000395886 tetratricopeptide repeat domain 19
CYTB ENST00000361789 mitochondrially encoded cytochrome b
NBEA NM_015678 neurobeachin
CTSO NM_001334 cathepsin O
SNORA23 NR_002962 small nucleolar RNA, H/ACA box 23
PMP22 NM_000304 peripheral myelin protein 22
CXCL1 NM_001511 chemokine ligand (melanoma growth stimulating activity, alpha)
CDKN2A NM_058197 cyclin-dependent kinase inhibitor 2A (melanoma, p16)
LDB3 NM_001171610 LIM domain binding 3
MIPEP NM_005932 mitochondrial intermediate peptidase
MAPK8 NM_139047 mitogen-activated protein kinase 8
SNORD15A NR_000005 small nucleolar RNA, C/D box 15A
SNAR-A3* NR_024214 small ILF3/NF90-associated RNA A3
ASCC1 NM_015947 activating signal cointegrator 1 complex subunit 1
ZNF235 NM_004234 zinc finger protein 235
MBIP NM_001144891 MAP3K12 binding inhibitory protein 1
C13orf38 NM_001198908 chromosome 13 open reading frame 38
LOC100132707* NR_024477 hypothetical LOC100132707
UTRN NM_007124 utrophin
CALM2 NM_001743 calmodulin 2 (phosphorylase kinase, delta)
MOCS1* NM_005943 molybdenum cofactor synthesis 1
ZNF212 NM_012256 zinc finger protein 212
KIAA0090 NM_015047 KIAA0090 (KIAA0090)
SNORD3B-1 NR_003271 small nucleolar RNA, C/D box 3B-1
HLX NM_021958 H2.0-like homeobox
C9orf72 NM_145005 chromosome 9 open reading frame 72
SEC23B NM_032985 Sec23 homolog B (S. cerevisiae)
WRAP73 NM_017818 WD repeat containing, antisense to TP73
MAN1A1 NM_005907 mannosidase, alpha, class 1A, member 1
S100B NM_006272 S100 calcium binding protein B
CCDC93 NM_019044 coiled-coil domain containing 93
ZNF3 NM_032924 zinc finger protein 3
FTH1 NM_002032 ferritin, heavy polypeptide 1
RAB30 NM_014488 RAB30, member RAS oncogene family
RDM1 NM_001034836 RAD52 motif 1
BTAF1 NM_003972 BTAF1 RNA polymerase II,
HLA-F NM_018950 major histocompatibility complex, class I, F
CABYR NM_012189 calcium binding tyrosine-(Y)-phosphorylation regulated
MAP4K2 NM_004579 mitogen-activated protein kinase 2
PRPF18 ENST00000320054 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)
CALM3 NM_005184 calmodulin 3 (phosphorylase kinase, delta)
ALKBH4 NM_017621 alkB, alkylation repair homolog 4 (E. coli)
LOC399744* NR_024497 hypothetical LOC399744
SETD6 NM_024860 SET domain containing 6
SH3TC2 NM_024577 SH3 domain and tetratricopeptide repeats 2
ARHGAP35 NM_004491 Rho GTPase activating protein 35
CHCHD6 NM_032343 coiled-coil-helix-coiled-coil-helix domain containing 6
RC3H2 NM_018835 ring finger and CCCH-type domains 2
WDR46 NM_005452 WD repeat domain 46