Table 2.
Features of the common bean (Phaseolus vulgaris) CLE genes
| Name | Phytozome v10 ID | Pre-propeptide lengtha | Predicted intron | Chromosome location | Orientation | Oelkers et al. (2008) | uniprot.org |
|---|---|---|---|---|---|---|---|
| PvCLE1 | Phvul.011G065200 | 96 | Y | Chr11:5675757..5676469 | Reverse | – | XP_007132079 |
| PvCLE3 | Phvul.006G092600 | 99 | Y | Chr06:21113605..21114127 | Forward | PvCLE169 | XP_007147057 |
| PvCLE4 | Phvul.002G008500 | 67 | N | Chr02:960456..961284 | Reverse | – | XP_007156683 |
| PvCLE5 | Phvul.003G035700 | 121 | N | Chr03:3588969..3589711 | Forward | – | XP_007153443 |
| PvCLE6 | Phvul.007G027300 | 94 | Y | Chr07:2049797..2054614 | Reverse | PvCLE176 | XP_007142910 |
| PvCLE7 | Phvul.002G085300 | 108 | N | Chr02:13297480..13297806 | Forward | – | XP_007157625 |
| PvCLE8 | Phvul.009G187200 | 95 | N | Chr09:27684592..27685489 | Forward | – | XP_007138182 |
| PvCLE9 | Phvul.003G190100 | 95 | N | Chr03:40210422..40210709 | Forward | – | XP_007155310 |
| PvCLE10 | Phvul.002G079000 | 101 | Y | Chr02:11819569..11820862 | Reverse | – | XP_007157554 |
| PvCLE11 | Phvul.001G025500 | 77 | N | Chr01:2309373..2309606 | Reverse | – | XP_007160889 |
| PvCLE12 | Phvul.004G023800 | 108 | Y | Chr04:2459046..2460734 | Reverse | – | XP_007151170 |
| PvCLE13 | Phvul.005G069900 | 102 | Y | Chr05:11484552..11485119 | Reverse | – | XP_007149431 |
| PvCLE14 | Phvul.007G068800 | 88 | N | Chr07:6196473..6196739 | Reverse | – | XP_007143392 |
| PvCLE15a | Phvul.007G068400 | 85 | N | Chr07:6165176..6165433 | Reverse | – | XP_007143388 |
| PvCLE15b | Phvul.007G068500 | 83 | N | Chr07:6181155..6181406 | Forward | – | XP_007143389 |
| PvCLE15c | Phvul.007G068600 | 87 | N | Chr07:6184216..6184479 | Reverse | – | XP_007143390 |
| PvCLE15d | Phvul.007G068700 | 84 | N | Chr07:6189914..6190168 | Forward | – | XP_007143391 |
| PvCLE16 | Phvul.004G117600 | 86 | N | Chr04:38385127..38385862 | Forward | – | XP_007152295 |
| PvCLE17 | Phvul.002G287300 | 97 | N | Chr02:45090923..45091742 | Reverse | – | XP_007160038 |
| PvCLE18 | Phvul.003G137800 | 85 | N | Chr03:33013056..33013313 | Reverse | – | XP_007154669 |
| PvCLE19 | Phvul.002G095900 | 104 | Y | Chr02:17549689..17550064 | Forward | – | XP_007157755 |
| PvCLE20 | Phvul.001G120900 | 92 | N | Chr01:34104465..34105721 | Forward | – | XP_007162068 |
| PvCLE21 | Phvul.008G203000 | 88 | N | Chr08:51319273..51319539 | Forward | – | XP_007141519 |
| PvCLE22 | Phvul.006G016000 | 90 | N | Chr06:7671543..7672241 | Reverse | - | XP_007146145 |
| PvCLE23 | Phvul.008G211300 | 74 | N | Chr08:52313956..52316136 | Forward | – | XP_007141620 |
| PvCLE24 | Phvul.007G101800 | 109 | N | Chr07:11339237..11339566 | Reverse | – | XP_007143789 |
| PvCLE25 | Phvul.003G177600 | 110 | N | Chr03:38979082..38979719 | Forward | – | XP_007155150 |
| PvCLE26 | Phvul.002G168200 | 85 | Y | Chr02:31082684..31084138 | Reverse | – | XP_007158622 |
| PvCLE27 | Phvul.002G081400 | 106 | N | Chr02:12270950..12272253 | Reverse | – | XP_007157583 |
| PvCLE28 | Phvul.005G067900 | 83 | N | Chr05:10636536..10636787 | Reverse | – | XP_007149409 |
| PvCLE29 | Phvul.011G160600 | 81 | N | Chr11:42316953..42317385 | Forward | – | XP_007133207 |
| PvCLE30 | Phvul.011G160700 | 82 | N | Chr11:42325813..42326352 | Forward | – | XP_007133208 |
| PvCLE31 | Chr01: 14906066..14906353 | 95 | N | Chr01: 14906066..14906353 | Forward | – | – |
| PvCLE33 | Chr11:42291102..42291350 | 82 | N | Chr11:42291102..42291350 | Reverse | - | - |
| PvCLE34 | Chr05:10644869..10645097 | 75 | N | Chr05:10644869..10645097 | Reverse | – | – |
| PvCLE35 | Phvul.003G057900 | 75 | N | Chr03:7610340..7610764 | Forward | – | XP_007153705 |
| PvCLE40 | Phvul.011G056800 | 114 | Y | Chr11:4877577..4878010 | Forward | – | XP_007131981 |
| PvCLV3 | Phvul.005G120600 | 104 | Y | Chr05:34343926..34344486 | Reverse | – | XP_007150035 |
| PvNIC1 | Phvul.005G097000 | 80 | N | Chr05:28793851..28794118 | Reverse | – | XP_007149764 |
| PvRIC1 | Phvul.005G096900 | 115 | Y | Chr05:28775368..28775758 | Reverse | – | – |
| PvRIC2 | Phvul.011G135900 | 93 | N | Chr11:30985821..30986626 | Reverse | – | XP_007132915 |
| PvTDIF1 | Phvul.008G124100 | 118 | N | Chr08:17187233..17187933 | Forward | – | XP_007140575 |
| PvTDIF2 | Phvul.002G187400 | 108 | N | Chr02:34265616..34266385 | Forward | – | XP_007158853 |
| PvTDIF3 | Phvul.009G244400 | 115 | N | Chr09:35772334..35773004 | Reverse | – | XP_007138869 |
a Number of amino acid residues.
Listed are the genetic location, pre-propeptide length, and predicted intron presence.