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. 2015 Jun 8;290(32):19681–19696. doi: 10.1074/jbc.M115.653113

TABLE 1.

X-ray structure data collection and refinement statistics

Statistics for the highest resolution shell are shown in parentheses r.m.s. means root mean square deviation.

PDE12 with compound 3 PDE12 apo
Wavelength 1.54178 0.97872
Resolution range 26.03–1.8 (1.864–1.8) 25.73–1.78 (1.844–1.78)
Space group P 21 21 21 P 1 21 1
Unit cell 56.309 66.532 124.88 90 90 90 56.688 62.554 65.393 90 110.398 90
Total reflections 191,057 155,459
Unique reflections 39,837 (2513) 41,197 (4117)
Multiplicity 4.8 (2.1) 3.8 (3.8)
Completeness (%) 0.92 (66.1) 1.00 (1.00)
Mean I/σ(I) 24.45 (2.84) 16.69 (3.61)
Wilson B-factor 18.04 16.21
R-merge 0.054 (0.266) 0.073 (0.402)
R-meas 0.060 (0.332) 0.085 (0.242)
CC1/2 (0.904) (0.863)
Reflections used in refinement 39,836 (2513) 41,193 (4117)
Reflections used for R-free 1254 (67) 1291 (131)
R-work 0.1743 (0.2218) 0.1624 (0.2113)
R-free 0.2114 (0.2410) 0.1975 (0.2428)
No. of non-hydrogen atoms 4113 3851
    Macromolecules 3580 3454
    Ligands 69 37
Protein residues 449 434
r.m.s. (bonds) 0.014 0.014
r.m.s. (angles) 1.63 1.62
Ramachandran favored (%) 97 98
Ramachandran allowed (%) 2.6 1.8
Ramachandran outliers (%) 0.22 0.23
Rotamer outliers (%) 0.75 1.1
Clash score 1.82 0.87
Average B-factor 21.83 21.15
    Macromolecules 20.78 19.93
    Ligands 17.57 41.59
    Solvent 30.55 30.76