TABLE 1.
X-ray structure data collection and refinement statistics
Statistics for the highest resolution shell are shown in parentheses r.m.s. means root mean square deviation.
PDE12 with compound 3 | PDE12 apo | |
---|---|---|
Wavelength | 1.54178 | 0.97872 |
Resolution range | 26.03–1.8 (1.864–1.8) | 25.73–1.78 (1.844–1.78) |
Space group | P 21 21 21 | P 1 21 1 |
Unit cell | 56.309 66.532 124.88 90 90 90 | 56.688 62.554 65.393 90 110.398 90 |
Total reflections | 191,057 | 155,459 |
Unique reflections | 39,837 (2513) | 41,197 (4117) |
Multiplicity | 4.8 (2.1) | 3.8 (3.8) |
Completeness (%) | 0.92 (66.1) | 1.00 (1.00) |
Mean I/σ(I) | 24.45 (2.84) | 16.69 (3.61) |
Wilson B-factor | 18.04 | 16.21 |
R-merge | 0.054 (0.266) | 0.073 (0.402) |
R-meas | 0.060 (0.332) | 0.085 (0.242) |
CC1/2 | (0.904) | (0.863) |
Reflections used in refinement | 39,836 (2513) | 41,193 (4117) |
Reflections used for R-free | 1254 (67) | 1291 (131) |
R-work | 0.1743 (0.2218) | 0.1624 (0.2113) |
R-free | 0.2114 (0.2410) | 0.1975 (0.2428) |
No. of non-hydrogen atoms | 4113 | 3851 |
Macromolecules | 3580 | 3454 |
Ligands | 69 | 37 |
Protein residues | 449 | 434 |
r.m.s. (bonds) | 0.014 | 0.014 |
r.m.s. (angles) | 1.63 | 1.62 |
Ramachandran favored (%) | 97 | 98 |
Ramachandran allowed (%) | 2.6 | 1.8 |
Ramachandran outliers (%) | 0.22 | 0.23 |
Rotamer outliers (%) | 0.75 | 1.1 |
Clash score | 1.82 | 0.87 |
Average B-factor | 21.83 | 21.15 |
Macromolecules | 20.78 | 19.93 |
Ligands | 17.57 | 41.59 |
Solvent | 30.55 | 30.76 |