TABLE 3.
Kinetic parameters of pre-steady-state PHD2- and FIH-catalyzed hydroxylation
Conditions were as follows: an anaerobically prepared mixture of 0.8 mm PHD2, 1 mm peptide substrate, 5 mm 2OG, and 0.7 mm Fe(II) or 0.5 mm FIH, 1 mm peptide substrate, 5 mm 2OG, and 0.4 mm Fe(II) in 50 mm HEPES (pH 7.5) was rapidly mixed with O2-saturated buffer at 5 °C. ND, not determined.
Enzyme | Substrate | Stopped-flow, 520 nm (PHD2), 500 nm (FIH) |
Rapid quench-flow |
||
---|---|---|---|---|---|
kfall phase | krise phase | kproduct | ksuccinate | ||
s−1 | s−1 | s−1 | s−1 | ||
PHD2 | CODD HIF-1α | 0.040 ± 0.007 | 0.015 ± 0.005 | 0.0155 ± 0.0012 | 0.0130 ± 0.0020 |
PHD2 | CODD HIF-2α | 0.450 ± 0.010 | 0.027 ± 0.001 | 0.0124 ± 0.0030 | 0.0120 ± 0.0070 |
PHD2 | NODD HIF-1α | 0.178 ± 0.006 | 0.002 ± 0.001 | 0.0080 ± 0.0020 | 0.0060 ± 0.0010 |
PHD2 | NODD HIF-2α | 0.195 ± 0.009 | 0.003 ± 0.001 | 0.0199 ± 0.0032 | 0.0270 ± 0.0060 |
FIH | CAD HIF-1α35-mer | 4.5 ± 0.3 | 0.009 ± 0.005 | 0.33 ± 0.07 | 0.3 ± 0.1 |
FIH | CAD HIF-2α35-mer | 4.9 ± 0.2 | 0.017 ± 0.01 | 0.12 ± 0.01 | 0.11 ± 0.03 |
FIH | CAD HIF-1α19-mer | ND | ND | 0.013 ± 0.003 | 0.016 ± 0.004 |