Table 5.
The full repertoire of protein secretion/translocation systems of Pseudomonas corrugata (Pcor) and P. mediterranea (Pmed) type strains.
| Secretion system | P. corrugata NCPPB2445T | P. mediterranea CFBP5447T | P. fluorescens F113 | |
|---|---|---|---|---|
| T1SS | PcorDraft_00553-00551 | PmedDraft_01363-01365 | PSF113_0209-0211 | |
| PcorDraft_00252 | PmedDraft_02514 | PSF113_0530 | ||
| PcorDraft_00971-00969 | PmedDraft_00943-00941 | PSF113_1508-1510 | ||
| PcorDraft_05030-05032 | PmedDraft_04444-04442 | PSF113_2734-2736 | ||
| PcorDraft_00188-00190 | PmedDraft_04408-04410 | PSF113_2945-2947 | ||
| PcorDraft_04243-04245 | PmedDraft_05697-05699 | PSF113_3005-3007 | ||
| PcorDraft_03958-03956 | PmedDraft_00478-00480 | PSF113_3303-3305 | ||
| T2SS | Xcp | PcorDraft_04315-04305 | PmedDraft_01591-01607 | PSF113_0437-0447 |
| Putative substrates | PcorDraft_04316 PcorDraft_03149 PcorDraft_03269 PcorDraft_02349 |
PmedDraft_01594 PmedDraft_05894 PmedDraft_04897 PmedDraft_05316 PmedDraft_00632 |
PSF113_0435, PSF113_0610, PSF113_2337, PSF113_3279 |
|
| Hxc | PcorDraft_00325-00347 | PmedDraft_04580-04583 | PSF113_3690-3700 | |
| T3SS | SPI-I | not detected in Pcor strains | not detected in Pmed strains | PSF113_1778-1801 |
| Hrp1 | not detected in Pcor strains | not detected in Pmed strains | PSF113_5585-5610 | |
| T4SS | GI-like | not detected in strain CFBP5447 (partially only in TEIC1148 and CFBP5403) | PmedDraft_00600-00584 | PSF113_3314-3334 |
| T5aSS | PcorDraft_02455 | PmedDraft_03164 | PSF113_2779 | |
| PcorDraft_02456 | PmedDraft_03163 | PSF113_2780 | ||
| PcorDraft_04540 | PmedDraft_05328 | PSF113_4399 | ||
| PcorDraft_04609 | PmedDraft_01659 | PSF113_5339 | ||
| PcorDraft_00187 | PmedDraft_00248 | PSF113_5848 | ||
| T5bSS | PcorDraft_03404-03405 | PmedDraft_00300-00301 | PSF113_0792-0793 | |
| PcorDraft_02193-02192 | PmedDraft_00959-00960 | PSF113_1489-1490 | ||
| T5dSS | not detected in Pcor strains | PmedDraft_00929 | PSF113_1517 | |
| T6SS | I | PcorDraft_01669-01644 | PmedDraft_03358-03331 | PSF113_5785-5808 |
| II | PcorDraft_04761-04784 | PmedDraft_05238-05225 | PSF113_2407-2422 | |
| III | PcorDraft_05211-05196 | not detected in strains CFBP5447 and TEIC1022 | PSF113_5815-5833 | |
| Putative substrates | PcorDraft_05064 (hcp) | PmedDraft_03683 (hcp) | ||
| PcorDraft_00287 (vgrG) | PmedDraft_02478 (vgrG) | |||
| PcorDraft_01038 (vgrG) | PmedDraft_03454 (vgrG) | |||
| PcorDraft_00092 (vgrG) | PmedDraft_04237 (vgrG) | |||
| PcorDraft_04873 (vgrG) | PmedDraft_03810 (vgrG) | |||
| PcorDraft_03798 (vgrG) | PmedDraft_04962 (vgrG) | |||
TEIC, Technological Educational Institute of Crete Bacterial collection; CFBP, International Center for Microbial Resources, French Collection for Plant-associated Bacteria, INRA, Angers, France; NCPPB, National Collection of Plant Pathogenic Bacteria, Fera, York, U.K. Isolate names followed by the letter “T” are type strains. Xcp, extracellular protein; Hpx, homolog of Xcp; SPI-I and SPI-II, T3SS homologs.