Table 1.
Transcriptomic and proteomic data for selected cell wall synthesis genes and their homologues
| AGI | Gene name | RMA computed expression value (Log2) | # Peptides |
|---|---|---|---|
| Primary wall cellulose synthases | |||
| AT4G32410 | CESA1 | 10.569 | 15 |
| AT5G05170 | CESA3 | 11.942 | 16 |
| AT5G64740 | CESA6 | 10.526 | ND |
| AT4G39350 | CESA2 | 8.255 | ND |
| AT2G21770 | CESA9 | 4.982 | ND |
| Secondary wall cellulose synthases | |||
| AT5G17420 | CESA7/IRX3 | 5.546 | ND |
| AT4G18780 | CESA8/IRX1 | 2.597 | ND |
| AT5G44030 | CESA4/IRX5 | 2.037 | ND |
| Xyloglucan biosynthetic enzymes | |||
| AT3G28180 | CSLC4 | 9.963 | 6 |
| AT3G62720 | XXT1 | 10.794 | 6 |
| AT4G02500 | XXT2 | 9.656 | 4 |
| AT1G74380 | XXT5 | 9.689 | 10 |
| Xylan reducing end oligosaccharide biosynthetic enzymes | |||
| AT5G54690 | IRX8 | 5.249 | ND |
| AT2G28110 | IRX7/FRA8 | 7.959 | ND |
| AT1G19300 | PARVUS | 5.615 | ND |
| Xylan biosynthetic enzymes | |||
| AT4G36890 | IRX14 | 8.494 | 3 |
| AT1G77130 | GUX3 | 8.760 | 6 |
| AT5G61840 | IRX10L | 9.516 | 11 |
| AT1G27600 | IRX9L | 9.396 | ND |
| AT1G27440 | IRX10 | 6.921 | ND |
| AT2G37090 | IRX9 | 3.801 | ND |
| AT5G67230 | IRX14L | 2.128 | ND |
| AT3G18660 | GUX1 | 1.997 | ND |
| AT4G33330 | GUX2 | 1.972 | ND |
RNA and proteins were extracted from WT Col0 liquid grown callus. Full transcriptomic data can be found in Data S1. RMA values less than about 6 can be considered unreliable, since their low expression results in a low signal to noise ratio, but they have been included for completeness. Proteomic data were extracted from Nikolovski et al. (2012).