Table 3. Results of a genome scan for morphological QTL using multiple QTL models (MQM) based on the approach of Arends et al. (2010).
| Trait | LOD* | LG | pos (cM) | Closest Marker | Interval (cM) | Phenotypic Score by Haplotype | Add | Dom | PVE (%) | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lf/Lf | Lf/Trc | Trc/Trc | |||||||||
| RW1 | 7.52 | 7 | 15 | c100.563038 | 12.9–24.7 | −0.00754 | −0.00259 | 0.01265 | −0.00982 | −0.00412 | 15.2 |
| 4.54 | 3 | 15 | c209.450133 | 5.0–23.5 | −0.00698 | −0.00008 | 0.00606 | −0.00652 | 0.00042 | 9.5 | |
| 4.11 | 16 | 0 | c96.18553 | 0.0–60.8 | −0.00615 | −0.00105 | 0.01124 | −0.00870 | −0.00307 | 8.6 | |
| RW2 | 9.26 | 7 | 5 | c193.987462 | 0.0–35.0 | −0.00914 | −0.00094 | 0.01037 | −0.00976 | −0.00109 | 18.4 |
| RW3 | 5.42 | 7 | 80 | c89.778084 | 79.5–86.2 | 0.00548 | −0.00373 | 0.00002 | 0.00273 | −0.00461 | 11.2 |
| 4.383 | 22 | 60 | c259.89154 | 20.0–61.2 | −0.00075 | −0.00134 | 0.00309 | −0.00192 | −0.00184 | 9.2 | |
| 4.383 | 14 | 5 | c158.620001 | 1.3–11.9 | −0.00546 | 0.00309 | −0.00108 | −0.00219 | 0.00482 | 9.2 | |
| 3.591 | 5 | 35 | c18.4038452 | 34.9–40.4 | 0.00306 | −0.00270 | 0.00050 | 0.00128 | −0.00313 | 7.6 | |
| 9.122 | 10.1 | 5 | c22.6622454 | 0.0–5.0 | −0.00365 | −0.00201 | 0.00582 | −0.00474 | −0.00209 | 18.1 | |
| 3.967 | 19 | 5 | c162.956970 | 0.9–16.5 | 0.00400 | −0.00263 | −0.00121 | 0.00260 | −0.00271 | 8.3 | |
| RW4 | 3.91 | 13 | 30 | c62.3129666 | 10.0–45.0 | 0.00598 | −0.00267 | −0.0019 | 0.003938 | −0.00338 | 8.2 |
| RW5 | 5.26 | 4 | 25 | c61.3236042 | 17.4–30.0 | 0.00633 | −0.00141 | −0.00106 | 0.00369 | −0.00334 | 10.9 |
| 4.05 | 2 | 50 | c11.4108123 | 0.0–52.7 | 0.00521 | 0.00023 | −0.00385 | 0.00453 | −0.00056 | 8.5 | |
| DF1 (sex) | 23.19 | 7 | 30 | c0.5071706 | 24.7–30.0 | −1.29041 | 0.11693 | 1.50014 | −2.04048 | 0.39865 | 39.9 |
| 4.55 | 11 | 100 | c207.450361 | 90.0–105.1 | 0.41163 | −0.06853 | −0.06784 | 0.23974 | 0.09504 | 9.5 | |
| 5.44 | 15 | 63.8 | c74.200218 | 25.0–63.8 | 0.33120 | 0.23140 | −0.97430 | 0.65275 | 0.11236 | 11.2 | |
The effect of alleles on the traits (relative warp scores) are given. All LOD scores exceed the genome-wide 95% C.I. as determined by 1000 permutations of the data. RW, relative warp; DF1, discriminant function axis 1, which distinguishes F2 sexes; LG, linkage group; pos, position (cM); Add, additive effects; Dom, dominance effect; PVE, percent variance explained.