Table 5. Results of an MQM mapping procedure based on the method of Broman and Sen (2009) including sex as a cofactor.
| Trait | Model | LOD | PVE% | P | df | Closest Marker | Interval (cM) | Phenotypic Score by Haplotype | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Lf/Lf | Lf/Trc | Trc/Trc | ||||||||
| RW1 | Full: | 12.89 | 22.8 | >0.0001 | ||||||
| Drop-one: | ||||||||||
| LG1 @ 30.9 cM | 1.72 | 3.3 | 0.0238 | 2 | c7.4421711 | 7–61 | 0.00399 | 0.00037 | −0.00553 | |
| LG3 @ 8.2 cM | 2.73 | 5.3 | 0.0027 | 2 | c401.23855 | 2.1–35.0 | −0.00754 | 0.00022 | 0.00585 | |
| LG7 @ 14.6 cM | 2.34 | 4.5 | 0.0063 | 2 | c124.1667602 | 0–46.6 | −0.00756 | −0.00259 | 0.01264 | |
| LG13 @ 0 cM | 3.69 | 7.2 | 0.0003 | 2 | c26.2061138 | 0–17 | −0.00846 | 0.00154 | 0.00310 | |
| Sex | 1.33 | 2.5 | 0.0164 | 1 | ||||||
| RW2 | Full: | 18.5 | 38.5 | >0.0001 | ||||||
| Drop-one: | ||||||||||
| LG7 @ 46.6 cM | 3.55 | 6.0 | 0.0172 | 6 | c0.18725296 | 0–59 | −0.01015 | 0.00025 | 0.00791 | |
| LG8 @ 2.9 cM | 2.82 | 4.7 | 0.0024 | 2 | c106.1809812 | 0–55 | 0.00434 | 0.00061 | −0.00943 | |
| LG16 @ 24.1 cM | 3.02 | 5.1 | 0.0414 | 6 | c52.3743243 | 9–60.8 | −0.00199 | 0.00099 | −0.00098 | |
| Sex | 9.16 | 16.8 | >0.0001 | 1 | ||||||
| LG7 @ 46.6 cM × LG16 @ 24.1 cM | 2.86 | 4.8 | 0.0149 | 4 | ||||||
| RW3 | Full: | 9.87 | 15.4 | >0.0001 | ||||||
| Drop-one: | ||||||||||
| LG7 @ 81.0 cM | 2.63 | 5.0 | 0.0033 | 2 | c32.5715629 | 75–84 | 0.00514 | −0.00398 | 0.00072 | |
| LG10 @ 2.0 cM | 3.57 | 6.8 | 0.0004 | 2 | c22.4015123 | 0–7.2 | −0.00524 | −0.00152 | 0.00627 | |
| LG19 @ 16.5 cM | 1.95 | 3.6 | 0.0143 | 2 | c60.3623148 | 0–22.0 | 0.00316 | −0.00119 | −0.00254 | |
| RW4 | Full: | 3.20 | 8.6 | 0.0020 | ||||||
| Drop-one: | ||||||||||
| LG13 @ 32.4 cM | 2.10 | 5.2 | 0.0090 | 2 | c0.5071706 | 0–45.0 | −0.00243 | −0.00137 | 0.00376 | |
| Sex | 1.37 | 3.4 | 0.0133 | 1 | ||||||
| RW5 | Full: | 7.91 | 14.2 | >0.0001 | ||||||
| Drop-one: | ||||||||||
| LG2 @ 49.7 cM | 2.84 | 5.1 | 0.0018 | 2 | c11.8641264 | 0–52.7 | 0.00546 | 0.00007 | −0.00337 | |
| LG4 @ 24.6 cM | 2.94 | 5.5 | 0.0015 | 2 | c28.74404 | 0–62.0 | 0.00662 | −0.00144 | −0.00106 | |
| LG10 @ 0.0 cM | 1.74 | 3.6 | 0.0210 | 2 | c22.2628020 | 0–31.8 | 0.00478 | −0.00069 | −0.00201 | |
Positions of QTL are given in centimorgans for each linkage group. The effect of alleles on shape traits (RWs) are given, with values of Labeotropheus fueleborni (Lf) and Tropheops "red cheek" (Trc) homozygotes and heterozygotes provided. RW, relative warp; LG, linkage group; PVE%, percent variance explained.