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. 2015 Jul 6;12(108):20150312. doi: 10.1098/rsif.2015.0312

Figure 1.

Figure 1.

Prototypical genetic network modules. The prototypical input–output system (a) with total DNA (Inline graphic), mRNA Inline graphic and protein (Inline graphic) is shown. Dimerization of monomeric input transcription factor (TF) (Inline graphic) and output TF (Inline graphic) has been considered as well as operator-binding and lumped transcription, translation and degradation. The input–output ‘module’ acts as a building block for modelling larger networks. For the case of multiple operators (b), the system also includes the total additional TF binding sites (Inline graphic) and the total protein concentration also includes the TF bound to the second operator. In (b), the additional regulatory element is part of a second promoter, but the models and methodology are also applicable when additional elements regulate expression of the same gene. (Online version in colour.)