Table II. Transcription factors and regulators showing negative correlation between methylation change and expression change.
A total of 318 genes across five comparisons between consecutive developmental stages were analyzed (Pearson correlation coefficient < −0.6 and P < 0.05).
| Type | Category | Annotation |
|---|---|---|
| Transcription factor | ||
| Os01g51610 | ABI3/VP1 | B3 DNA-binding domain-containing protein |
| Os02g26430 | WRKY | WRKY42 |
| Os02g39220 | FAR-RED-IMPAIRED RESPONSE1 | Transposon protein, putative, unclassified |
| Os04g36790 | TRIHELIX DNA-BINDING DOMAIN CONTAINING TRANSCRIPTION FACTOR | Transcription factor-like protein, putative |
| Os04g58010 | ABI3/VP1 | B3 DNA-binding domain-containing protein |
| Os06g07030 | AP2-EREBP | AP2 domain-containing protein |
| Os06g47150 | ARF | Auxin response factor18, putative |
| Os08g41960 | MADS | OsMADS37, MADS box family gene |
| Os09g28310 | bZIP | bZIP transcription factor, putative |
| Os11g24130 | PLANT AT-RICH SEQUENCE- and ZINC-BINDING PROTEIN | Zinc-binding protein, putative |
| Os11g35390 | MYELOBLASTOSIS | MYB family transcription factor, putative |
| Os12g25120 | CCAAT | Core histone H2A/H2B/H3/H4, putative |
| Transcription regulator | ||
| Os02g51880 | SWIRM (for SWI3, RSC8, and MOIRA) DOMAIN CONTAINING TRANSCRIPTION REGULATOR | Amine oxidase, putative |
| Os03g05680 | JUMONJI | Histone demethylase JARID1C, putative |
| Os06g07040 | AUXIN/INDOLE-3-ACETIC ACID (IAA) | OsIAA20 |
| Os07g39690 | GCN5-RELATED N-ACETYLTRANSFERASE | GCN5-related N-acetyltransferase, putative |
| Os09g36220 | Pseudo TYPE-B PHOSPHO-ACCEPTING RESPONSE REGULATOR (ARR-B) | Response regulator receiver domain-containing protein |
| Os11g40490 | BTB (for BRIC-À-BRAC, TRAMTRACK) DOMAIN CONTAINING TRANSCRIPTION REGULATOR (TRAF) | MBTB63-Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF homology MATH domain |