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. 2015 Jun 22;168(4):1364–1377. doi: 10.1104/pp.15.00826

Figure 3.

Figure 3.

Recently duplicated soybean genes are preferentially targeted for differential methylation in response to SCN infection. A, Percentages of hypermethylated genes with various Ks values relative to the total number of paralogs that were contributed by the 13-Myr WGD (red bars; Ks = 0.06–0.39) or by the 59-Myr WGD (blue bars; Ks = 0.40–0.80). B, Percentages of the hypomethylated genes with various Ks values relative to the total number of paralogs that were contributed by the 13- or 59-Myr WGD events. The Ks values for all differentially methylated genes were calculated using MCScanX program. C, Homologous genes were targeted correspondingly for differential methylation. Shown are 69 collinearity events (red lines) among 133 differentially methylated genes. Gray lines represent whole-genome duplicated genes contributed by the 13- and 59-Myr WGD events. Chr, Chromosome.