Table I. Sources of merged consensus peaks of H3K9ac and H3K4me3 from DiffBind.
Histone modification peaks called in replicates (A and B) from the leaf base (Base) or the leaf blade (Blade) were analyzed with DiffBind. Number and percentage of consensus peaks merged from the indicated peak combinations of samples are shown.
| Combinations | Base A | Base B | Blade A | Blade B | H3K9ac Peaks |
H3K4me3 Peaks |
||
|---|---|---|---|---|---|---|---|---|
| No. | % | No. | % | |||||
| X | X | X | X | 26,742 | 61.1 | 24,661 | 74.9 | |
| X | X | 4,329 | 9.9 | 1,655 | 5.0 | |||
| X | X | X | 1,362 | 3.1 | 1,980 | 6.0 | ||
| X | X | X | 317 | 0.7 | 226 | 0.7 | ||
| X | X | 6,258 | 14.3 | 1,197 | 3.6 | |||
| X | X | X | 3,507 | 8.0 | 962 | 2.9 | ||
| X | X | X | 27 | 0.06 | 639 | 1.9 | ||
| Expected | 42,542 | 97.3 | 31,320 | 95.2 | ||||
| X | X | 940 | 2.1 | 846 | 2.6 | |||
| X | X | 236 | 0.5 | 91 | 0.3 | |||
| X | X | 10 | 0.02 | 608 | 1.8 | |||
| X | X | 6 | 0.01 | 43 | 0.1 | |||
| Unexpected | 1,192 | 2.7 | 1,588 | 4.8 | ||||