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. 2015 Aug 7;10(8):e0134840. doi: 10.1371/journal.pone.0134840

Table 2. Significant positive selection results in a minimum of two different tests.

Observed (Obs) FST with selection significance (highlighted P value<0.01) for the three continents (Africa, Asia and Europe) and for Europe and North Africa. Global cross-continental FST scores in the CEU, CHB, and YRI samples from the 1000 Genomes Selection Browser. Significant high and low FST values (extreme top 5% values of the distribution of FST values across the genome) are highlighted in bold. P values were calculated on the basis of higher rank scores in the genomic distribution. SPA scores for continental European, and North African allele gradients (highlighted in bold SPA scores above 99th percentile).

      Three Continents   Europe and North Africa   1000 Genomes Browser   Europe North Africa
Genomic region Position SNP_ID Obs FST FST P-value Obs FST FST P-value FST P_values SPA scores SPA scores
1p13 109821307 rs583104 0.282 0.004 0.035 0.136 0.594 0.001 0.655 0.300
1p13 109821511 rs602633 0.293 0.002 0.034 0.151 0.592 0.001 0.596 0.312
1p13 109822166 rs599839 0.276 0.005 0.033 0.160 0.578 0.001 0.651 0.278
1q41 222839838 rs1053316 0.264 0.005 0.058 0.019 0.416 0.008 0.376 0.534
1q41 222844840 rs3008633 0.256 0.007 0.056 0.023 0.412 0.009 0.310 0.484
9p21 21920346 rs4977746 0.236 0.011 0.051 0.032 0.342 0.018 0.425 1.116
9p21 21930147 rs7864029 0.249 0.007 0.040 0.085 0.350 0.017 0.373 0.517
9p21 21931896 rs7869004 0.273 0.004 0.041 0.077 0.389 0.011 0.480 0.592
9p21 21946322 rs2811717 0.292 0.003 0.094 0.001 0.648 4.923E-04 0.310 0.624
9p21 22072301 rs9632884 0.143 0.117 0.071 0.008 0.327 0.021 2.075 0.358
9p21 22099568 rs1537371 0.128 0.159 0.071 0.008 0.292 0.029 2.046 0.435
9p21 22103813 rs1333042 0.130 0.152 0.070 0.008 0.287 0.031 2.043 0.464