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. 2015 May 15;5(6):1939–1953.

Table 1.

Primer sequences used in this study

Primer name primer sequences
RT-miR-544 GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACgaactt
RT-RNU6B GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAAAAATAT
qRT-miR-544-F gccgcgATTCTGCATTTTTAGC
qRT-RNU6B-F TTCCTCCGCAAGGATGACACGC
qRT-miRNA-R GTGCAGGGTCCGAGGT
YWHAZ 3’UTR-1-F-XhoI ccgctcgagGGATACCCAAGGAGACGA
YWHAZ 3’UTR-1-R-NotI ataagaatgcggccgcCTCAAGTTATTTCCCTGTTA
YWHAZ 3’UTR-2-F-XhoI ccgctcgagTGACATTGGGTAGCATTA
YWHAZ 3’UTR-2-R-NotI ataagaatgcggccgcGTTTGGGATTTCAGTTTCT
1YWHAZ 3’UTR-mut-F1 TTGACTACAGCTTGCCGAGTGTTCCTTTA
1YWHAZ 3’UTR-mut-R1 TAAAGGAACACTCGGCAAGCTGTAGTCAA
1YWHAZ 3’UTR-del-F1 ACCTTTGACTACAGCGTGTTCCTTTAGAC
1YWHAZ 3’UTR-del-R1 GTCTAAAGGAACACGCTGTAGTCAAAGGT
1YWHAZ 3’UTR-mut-F2 CTCTGGATAAGGGAGCCAACGGTTCACATT
1YWHAZ 3’UTR-mut-R2 AATGTGAACCGTTGGCTCCCTTATCCAGAG
1YWHAZ 3’UTR-del-F2 TTACTCTGGATAAGGACGGTTCACATTC
1YWHAZ 3’UTR-del-R2 GAATGTGAACCGTCCTTATCCAGAGTAA
2YWHAZ 3’UTR-mut-F CCTCAGTACTTTAGCCGAAACACCAAACA
2YWHAZ 3’UTR-mut-R TGTTTGGTGTTTCGGCTAAAGTACTGAGG
2YWHAZ 3’UTR-del-F TTCCTCAGTACTTAACACCAAACA
2YWHAZ 3’UTR-del-R TGTTTGGTGTTAAGTACTGAGGAA
qRT-YWHAZ-F CCTCACTCCCGTTTCCG
qRT-YWHAZ-R CAGCACCTTCCGTCTTT
qRT-GAPDH-F ATGGGGAAGGTGAAGGTCG
qRT-GAPDH-R CTGGAAGATGGTGATGGGA
miR-544 5’RACE outer ACACAAAACGGATACACACGGTCA
miR-544 5’RACE inner TGGGTCCAAGACAAGGTTTGATAC
miR-544 promoter (-255)-F-XhoI ccgctcgagGGCTCTGTGAGATGGATGA
miR-544 promoter (+15)-F-XhoI ccgctcgagAGGCTGATTCTGGTGAAGG
miR-544 promoter (+256)-F-XhoI ccgctcgagTTCGGTTTATTGACATGGA
miR-544 promoter (+764)-R-HindIII cccaagcttAAAGGTTAGCACGGAAAAG
miR-544 promoter (+918)-R-HindIII cccaagcttCAAGGTTGGACGGTTAGTA
YWHAZ-F-EcoRI ccggaattcCCACCATGGATAAAAATGAGCTGG
YWHAZ-R-KpnI cggggtaccTTAATTTTCCCCTCCTTCTCC
KLF4-F-XhoI ccgctcgagCCACCATGAGGCAGCCACCTGG
KLF4-R-HindIII cccaagcttTTAAAAATGCCTCTTCATGTGT
qRT-KLF4-F GCCAAAGAGGGGAAGACGAT
qRT-KLF4-R CGCAGGTGTGCCTTGAGATG
ChIP qRT-F ACCTGCCCAGTGCTATTGTTT
ChIP qRT-R CAAAACGGATACACACGGTCA
KLF4-miR-544-mut-F1 ACTCAGCAAGAAGCACGGTATGTGT
KLF4-miR-544-mut-R1 ACACATACCGTGCTTCTTGCTGAGT
KLF4-miR-544-mut-F2 ATGACTTTAGAAGGAATGATGGCCTCTGG
KLF4-miR-544-mut-R2 CCAGAGGCCATCATTCCTTCTAAAGTCAT
KLF4-miR-544-mut-F3 GCCTCTGGGATTATTCCTCTCCTGG
KLF4-miR-544-mut-R3 CCAGGAGAGGAATAATCCCAGAGGC
KLF4-miR-544-mut-F4 GGTGCAGTGTAAATAAGGCCAAAAGC
KLF4-miR-544-mut-R4 GCTTTTGGCCTTATTTACACTGCACC
KLF4-miR-544-mut-F5 TGGGTCCCTGTAATTTGAGCGGGAA
KLF4-miR-544-mut-R5 TTCCCGCTCAAATTACAGGGACCCA
KLF4-miR-544-mut-F6 TTCCTGAGCGAATTATCATCAGCCC
KLF4-miR-544-mut-R6 GGGCTGATGATAATTCGCTCAGGAA
KLF4-miR-544-mut-F7 CGATGGCTGGAACAACGCTCGTGTG
KLF4-miR-544-mut-R7 CACACGAGCGTTGTTCCAGCCATCG
KLF4-miR-544-mut-F8 GCATCTAATTTGCTTCCAGGACCGC
KLF4-miR-544-mut-R8 GCGGTCCTGGAAGCAAATTAGATGC
KLF4-miR-544-mut-F9 CGTACCAAGTTTGTTCAAGGCAGTG
KLF4-miR-544-mut-R9 CACTGCCTTGAACAAACTTGGTACG

Mutant sequences were underlined.