Table 1.
Gene libraries used in ReprOlive.
Gene library | Tissue | Developmental stage | Sequencing method | Raw reads | Useful reads |
---|---|---|---|---|---|
PM-Subs | Pollen | Mature | Sanger | 666 | 518 |
PM | Pollen | Mature | Pyrosequencing | 216,497 | 111,242 |
PG1 | Pollen | 1 h germination | Pyrosequencing | 258,167 | 141,232 |
PG5 | Pollen | 5 h germination | Pyrosequencing | 233,921 | 120,276 |
S2 | Pistil | Stage2 | Pyrosequencing | 257,813 | 138,077 |
S3 | Pistil | Stage3 | Pyrosequencing | 247,401 | 141,903 |
S4 | Pistil | Stage4 | Pyrosequencing | 262,269 | 149,929 |
S4-Subs | Pistil | Stage4 | Sanger | 480 | 256 |
L | Leaf | Mature | Pyrosequencing | 223,399 | 41,178 |
L-Subs | Leaf | Mature | Sanger | 403 | 251 |
R1 | Root | Mature | Pyrosequencing | 231,237 | 25,899 |
R2 | Root | Radicle | Pyrosequencing | 145,204 | 22,075 |