Table 2.

Main features of transcriptomes in ReprOlive based on Full-LengtherNext analyses.

Feature	Pollen	Pistil	Vegetative	Reproductive
Assembling statistics
Number of useful reads	373,268	430,165	89,403	803,433
Mean length (nt)	383	385	545	384
Number of MIRA3 contigs	54,754	73,823	42,310	116,298
Number of Euler-SR contigs	4,807	15,216	490	16,211
Number of Contigs after CAP3 reconciliation	28,094	60,964	39,425	73,589
Number of TTs without chimeras and artifacts∗	27,823	60,400	38,919	72,846
Mean length (nt)	608	678	664	686
N50 (nt)	661	780	683	798
Annotation statistics
Longest TT (nt)	7,016	7,757	2,865	7,950
Number of ncRNAs	31	17	265	45
Number of TTs with annotation	24,861	54,129	36,700	63,965
Number of TTs with ortholog	21,607	46,910	32,076	55,356
With unique ortholog IDs	11,672	21,326	15,003	23,568
With ortholog from Arabidopsis thaliana RefSeq	21,233	46,924	31,945	54,890
Unique RefSeq IDs	9,769	16,565	12,489	17,612
With ortholog from A. thaliana TAIR10	21,312	47,038	31,980	55,067
Unique TAIR10 IDs	8,922	14,656	11,247	15,503
Number of TTs coding a complete protein	2,809	7,137	3,559	9,157
Unique, complete proteins	1,976	4,822	2,220	5,835
Number of TTs without ortholog	6,185	13,473	6,578	17,445
Likely coding for a complete protein	170	446	242	628
Likely coding for an incomplete protein	2610	5,312	2,523	6,486
Reference transcriptome
Number of representative TTs	13,589	25,720	17,340	28,972
Arabidopsis thaliana RefSeq orthologs	10,878	20,612	14,576	22,565
Unique RefSeq IDs	8,281	13,901	10,349	14,706
Arabidopsis thaliana TAIR10 orthologs	10,900	20,658	14,581	22,638
Unique TAIR10 IDs	7,842	12,883	9,756	13,584

^∗Artifacts are internal, direct or inverse, repetitions.