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. 2015 Aug 6;16(1):157. doi: 10.1186/s13059-015-0721-2

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© Emms and Kelly. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — A bootstrapped maximum likelihood phylogenetic tree of the OrthoFinder orthogroup containing the type IVc bHLH transcription factors (bHLH 8). The OrthoMCL orthogroups that are subsets of the OrthoFinder orthogroup are indicated by different coloured fonts. Thirty-six of the OrthoFinder clustered genes (coloured grey) failed to be clustered in any OrthoMCL orthogroup. The tree was inferred using RAxML using the PROTGAMMAAUTO model (the JTT was model was selected as having the highest likelihood) with 100 bootstrap replicates. Scale bar indicates the number of substitutions per site. Percentage bootstrap support values are indicated by coloured circles shown at internal nodes