. 2015 Aug 11;10(8):e0135310. doi: 10.1371/journal.pone.0135310

Table 3. Arrangement of each VNTR locus on genome of Pseudomonas syringae pv. actinidiae strain ICMP 18884.

MLVA	Pseudomonas syringae pv. actinidiae ICMP 18884 chromosome (annotated WGS sequence—accession NZ_CM002751 AOKO01000000)
VNTR name and related primers (5’→3’)	ORFs	Putative function of the ORFs
Psa-01F: CAAGCAGGAGATGGAAGAGCR: CATGCGGGCAATCTGATAGT	3007109–3007161	end of “LysR-type transcriptional regulator CysB” gene
	3007162–3007280	unknown
	3007281–3007310	beginning of “phosphoadenosine phosphosulfate reductase” gene
Psa-03F: TTATCGGCGGGATGTGTATTR: ACTGCGTCTGGTCGATAACC	874124–874146	end of “iron-uptake factor” gene
	874147–874274	unknown
	874275–874338	beginning of “peptide ABC transporter ATP-binding protein” gene
Psa-04F: ACGAGTCCGCTCCTACAAAAR: TACAACCAAGGTGGCCTGTT	2105844–2106066	unknown
Psa-05F: GTAGGCCGCGCTTTCAATR: TGCACTTCTTTTTCGCCTCT	5506545–5506733	unknown
Psa-06F: GCCTACCTTTTACGCCATGAR: TTAACGCAAGCAATCCTAACC	742145–742298	unknown
Psa-07F: TGTGCAATAAATGCGGGTTAR: CCGCCTCCAGTCAGGTTAAT	742264–742335	unknown
Psa-08F: GTCATTGGCGAACTGATCCTR: CTTTTCATGCTGAAAGTCATGC	1302522–1302545	end of “hypothetical protein” gene
Psa-08F: GTCATTGGCGAACTGATCCTR: CTTTTCATGCTGAAAGTCATGC	1302546–1302692	unknown
Psa-09F: CGCTGTCTGGCTTTGAAAATR: TAGGACGGCCGAAGGTTTAT	982509–982524	end of “transposase” gene
	982525–982566	unknown
	982567–982797	“hypothetical protein”
	982798–982840	unknown
	982841–983062	“hypothetical protein”
	983963–983129	unknown
Psa-10F: AAGCCTGAGTAAGCGGTTCAR: GCCCCAGTCCCAGTTGTAAT	2399774–2399797	end of “amino acid ABC transporter permease” gene
	2399798–2399831	unknown
	2399832–2399931	“hypothetical protein”
	2399932–2400012	unknown
	2400013–2400019	beginning of “ABC transporter” gene
GM-254F: CGTGTCACTGAAGTCACCATR: TATTTACCCGGTGTTGAGGC	254532–254617	end of “transposase” gene
GM-254F: CGTGTCACTGAAGTCACCATR: TATTTACCCGGTGTTGAGGC	254618–254898	unknown
GM-1553F: CTGGCACGAGACGAGTCCR: GCTGAGCTTGAAGGAGACG	1553396–1553473	end of “phosphoriboslglycinamide formyltransferase 2” gene
	1553474–1553562	unknown
	1553564–1553601	beginning of “citrate-proton symport" gene
GM-1834F: CGAGTTCTATTTGCGTCAGGR: TGTCCAGCGTAATCTTGCTC	1834304–1834581	Enclosed in "tellurium resistance protein TerA" gene
GM-4076F: TGGGTGGAATACAGCCGCCAR: CTTGTTCGGGAGCGGCAAGCT	4076304–4076431	unknown
GM-4076F: TGGGTGGAATACAGCCGCCAR: CTTGTTCGGGAGCGGCAAGCT	4076432–4076494	beginning of “glutamine synthetase" gene