Table 2. Tandem repeats at Nbs-1 binding sites.
| Number of Nbs1-binding sites | Total bp | Mean length (bp) | WGCW repeats b (% of sites) | CA repeats c (% of sites) | Either WGCW or CA repeats b , c (% of sites) | |
|---|---|---|---|---|---|---|
| Reproducible AID-dep. sites a | 37 | 79,144 | 2139 | 46% | 30% | 75.7% |
| AID-dep. sites (Exp 1) | 801 | 1,601,038 | 1999 | 6% | 18.6% | 24.1% |
| AID-dep. sites (Exp 2) | 284 | 568,000 | 2000 | 12% | 22.5% | 32.7% |
| Reproducible AID-indep. sites | 28 | 63,734 | 2276 | 4% | 7.1% | 10.7% |
| Random intervals | 10,000 | 2 x 107 | 2000 | 0.23% d | 0.97% e | 1.19% |
a Reproducible sites are produced by merging overlapping sites for 2 experiments, explaining their greater length
b≥400 bp in length within called site
c≥100 bp in length within called site
d 2,753 of 1.20 x 106 2-kb intervals in the genome (autosomes) have WGCW repeats ≥400 bp in length
e 11,610 of 1.20 x 106 2-kb intervals in the genome (autosomes) have CA repeats ≥100 bp in length