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Alignment of sequences of pep23, pep26, pep27, pep32 and Z(HER2:342), all glycines that linked the gaps among key residues were colored in brown (A); Backbone RMSDs as a function of time for the initial and successive structures of HER2/peptides complexes in MD trajectories (B-E). (B) HER2/pep32; (C) HER2/pep27; (D) HER2/pep26; (E) HER2/pep23. MD simulation for each complex was performed three times and shown in each panel.
