Table 2.

Details of loci governing SCN resistance in soybean identified by genome-wide association study performed using a set of diverse soybean plant introductions (PIs) genotyped with the SoySNP50K iSelect BeadChip

Chromosome no.	MSS position	MSS P-value	R2*	R2**	Total SNPs	Significant locus
						Start	End
1	51957108	1.85E-05	0.47	0.50	3	50726668	51960351
2	13017725	3.29E-05	0.47	0.49	1	13663384	13663384
4	7627278	4.94E-05	0.47	0.49	1	7627278	7627278
7	36560926	2.42E-06	0.47	0.50	5	36480188	36560926
7	43095766	2.63E-06	0.47	0.50	4	43093289	43095766
8	8607787	6.36E-05	0.47	0.49	2	7571195	8607787
10	43812212	3.29E-07	0.47	0.51	2	40113201	43812212
11	10174912	6.88E-05	0.47	0.49	3	10174912	14827458
12	37554204	5.86E-05	0.47	0.49	2	37537049	37554204
13	6988591	2.85E-05	0.47	0.49	8	29081	105760
13	31806761	5.52E-06	0.47	0.50	2	31806761	31828223
14	3172907	9.06E-05	0.47	0.49	1	3172907	3172907
15	10320348	3.93E-05	0.47	0.49	1	10320348	10320348
18	1286527	5.46E-05	0.47	0.49	2	1286527	6646067
19	39002612	1.18E-05	0.47	0.50	3	37531417	46497770
20	33218932	0.0001	0.47	0.49	1	33218932	33218932

Chr. – Chromosome, MSS – Most significant SNP, *– R square of model without SNP, **– R square of model with SNP