Table 5.
Predicted miR-29b and miR-223 binding of human and rat orthologs to the validated zebrafish genes
| Zfish refseq | Zfish ensembl | Zebrafish gene | Human ortholog (context score)a | Rat ortholog (context score)a |
|---|---|---|---|---|
| NM_001076587 | ENSDART00000087565 | eva1a | miR-29b (−0.21) | miR-223 (−0.32) |
| XM_688304 | ENSDART00000050945 | layna | miR-223 (−0.41) | miR-29b (−0.14) |
| miR-223 (−0.05) | ||||
| NM_001123280 | ENSDART00000064163 | nefmb | No direct ortholog | No direct ortholog |
| NEFH: miR-223 (−0.25) | ||||
| NM_199534 | ENSDART00000018351 | ina | miR-29b (−0.17) | miR-29b (−0.15) |
| XM_685557 | ENSDART00000021556 | si:ch211-51a6.2 | No direct ortholog | - |
| PRSS12: miR-223 (−0.08) | ||||
| NM_001201393 | ENSDART00000126365 | smoc1 | miR-223 (−0.11) | miR-223 (−0.11) |
| XM_003201552 | ENSDART00000124670 | lrrn3 | - | - |
| XM_003199845 | ENSDART00000081039 | sb:cb252 | No ortholog | No ortholog |
aContext score calculated by Targetscan for human and rat predictions (Grimson et al. [91])